Rearrange scripts

workflow/main.nf

@@ -99,25 +99,27 @@ process trackStart {
   """
 }
 
-errorScript = """singularity run 'docker://bicf/awscli:1.1' \ 
-  aws dynamodb update-item \
-    --table-name pipeline.tracking \
-    --key '{ \
-      "sessionId": {"S": "${workflow.sessionId}"}, \
-      "projectDir": {"S": "${workflow.projectDir}"}}' \
-    --update-expression 'SET #status = :status'  \
-    --expression-attribute-names '{"#status": "status"}' \
-    --expression-attribute-values '{":status": {"S":"error"}}'
+errorScript = """
+  singularity run 'docker://bicf/awscli:1.1' \
+    aws dynamodb update-item \
+      --table-name pipeline.tracking \
+      --key '{ \
+        "sessionId": {"S": "${workflow.sessionId}"}, \
+        "projectDir": {"S": "${workflow.projectDir}"}}' \
+      --update-expression 'SET #status = :status'  \
+      --expression-attribute-names '{"#status": "status"}' \
+      --expression-attribute-values '{":status": {"S":"error"}}'
   """
-completeScript = """singularity run 'docker://bicf/awscli:1.1' \ 
-  aws dynamodb update-item \
-    --table-name pipeline.tracking \
-    --key '{ \
-      "sessionId": {"S": "${workflow.sessionId}"}, \
-      "projectDir": {"S": "${workflow.projectDir}"}}' \
-    --update-expression 'SET #status = :status'  \
-    --expression-attribute-names '{"#status": "status"}' \
-    --expression-attribute-values '{":status": {"S":"complete"}}'
+completeScript = """
+  singularity run 'docker://bicf/awscli:1.1' \
+    aws dynamodb update-item \
+      --table-name pipeline.tracking \
+      --key '{ \
+        "sessionId": {"S": "${workflow.sessionId}"}, \
+        "projectDir": {"S": "${workflow.projectDir}"}}' \
+      --update-expression 'SET #status = :status'  \
+      --expression-attribute-names '{"#status": "status"}' \
+      --expression-attribute-values '{":status": {"S":"complete"}}'
 """
 
 workflow.onError {