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Commit 876a4c77 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Remove periods from module/container unit test ids

parent f735a275
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2 merge requests!78Develop,!76Resolve "Generate Raw RDS file"
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.gitlab-ci.yml
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...@@ -46,7 +46,7 @@ module_2.1.1_test: ...@@ -46,7 +46,7 @@ module_2.1.1_test:
- tags - tags
script: script:
- module load cellranger/2.1.1 - module load cellranger/2.1.1
- cellranger count --id=module-2.1.1 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2 - cellranger count --id=module-211 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
artifacts: artifacts:
name: "$CI_JOB_NAME" name: "$CI_JOB_NAME"
when: always when: always
...@@ -69,7 +69,7 @@ module_3.0.2_test: ...@@ -69,7 +69,7 @@ module_3.0.2_test:
- tags - tags
script: script:
- module load cellranger/3.0.2 - module load cellranger/3.0.2
- cellranger count --id=module-3.0.2 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2 - cellranger count --id=module-302 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
artifacts: artifacts:
name: "$CI_JOB_NAME" name: "$CI_JOB_NAME"
when: always when: always
...@@ -92,7 +92,7 @@ module_3.1.0_test: ...@@ -92,7 +92,7 @@ module_3.1.0_test:
- tags - tags
script: script:
- module load cellranger/3.1.0 - module load cellranger/3.1.0
- cellranger count --id=module-3.1.0 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2 - cellranger count --id=module-310 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
artifacts: artifacts:
name: "$CI_JOB_NAME" name: "$CI_JOB_NAME"
when: always when: always
...@@ -117,7 +117,7 @@ module_4.0.0_test: ...@@ -117,7 +117,7 @@ module_4.0.0_test:
- tags - tags
script: script:
- module load cellranger/4.0.0 - module load cellranger/4.0.0
- cellranger count --id=module-4.0.0 --transcriptome=/project/apps_database/cellranger/refdata-gex-GRCh38-2020-A --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2 - cellranger count --id=module-400 --transcriptome=/project/apps_database/cellranger/refdata-gex-GRCh38-2020-A --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
artifacts: artifacts:
name: "$CI_JOB_NAME" name: "$CI_JOB_NAME"
when: always when: always
...@@ -141,7 +141,7 @@ container_2.1.1_test: ...@@ -141,7 +141,7 @@ container_2.1.1_test:
- master - master
- tags - tags
script: script:
- singularity run 'docker://bicf/cellranger2.1.1:2.0.0' cellranger count --id=container-2.1.1 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2 - singularity run 'docker://bicf/cellranger2.1.1:2.0.0' cellranger count --id=container-211 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
artifacts: artifacts:
name: "$CI_JOB_NAME" name: "$CI_JOB_NAME"
when: always when: always
...@@ -163,7 +163,7 @@ container_3.0.2_test: ...@@ -163,7 +163,7 @@ container_3.0.2_test:
- master - master
- tags - tags
script: script:
- singularity run 'docker://bicf/cellranger3.0.2:2.0.0' cellranger count --id=container-3.0.2 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2 - singularity run 'docker://bicf/cellranger3.0.2:2.0.0' cellranger count --id=container-302 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
artifacts: artifacts:
name: "$CI_JOB_NAME" name: "$CI_JOB_NAME"
when: always when: always
...@@ -185,7 +185,7 @@ container_3.1.0_test: ...@@ -185,7 +185,7 @@ container_3.1.0_test:
- master - master
- tags - tags
script: script:
- singularity run 'docker://bicf/cellranger3.1.0:2.0.0' cellranger count --id=container-3.1.0 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2 - singularity run 'docker://bicf/cellranger3.1.0:2.0.0' cellranger count --id=container-310 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
artifacts: artifacts:
name: "$CI_JOB_NAME" name: "$CI_JOB_NAME"
when: always when: always
...@@ -209,7 +209,7 @@ container_4.0.0_test: ...@@ -209,7 +209,7 @@ container_4.0.0_test:
- master - master
- tags - tags
script: script:
- singularity run 'docker://bicf/cellranger4.0.0:2.0.0_indev' cellranger count --id=container-4.0.0 --transcriptome=/project/apps_database/cellranger/refdata-gex-GRCh38-2020-A --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2 - singularity run 'docker://bicf/cellranger4.0.0:2.0.0_indev' cellranger count --id=container-400 --transcriptome=/project/apps_database/cellranger/refdata-gex-GRCh38-2020-A --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
artifacts: artifacts:
name: "$CI_JOB_NAME" name: "$CI_JOB_NAME"
when: always when: always
......
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