From 876a4c77ea0d32e09dc3282203efeddbd607ec07 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Tue, 4 Aug 2020 11:18:45 -0500
Subject: [PATCH] Remove periods from module/container unit test ids
---
.gitlab-ci.yml | 16 ++++++++--------
1 file changed, 8 insertions(+), 8 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 6702c33..1ab01e1 100755
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -46,7 +46,7 @@ module_2.1.1_test:
- tags
script:
- module load cellranger/2.1.1
- - cellranger count --id=module-2.1.1 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
+ - cellranger count --id=module-211 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
artifacts:
name: "$CI_JOB_NAME"
when: always
@@ -69,7 +69,7 @@ module_3.0.2_test:
- tags
script:
- module load cellranger/3.0.2
- - cellranger count --id=module-3.0.2 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
+ - cellranger count --id=module-302 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
artifacts:
name: "$CI_JOB_NAME"
when: always
@@ -92,7 +92,7 @@ module_3.1.0_test:
- tags
script:
- module load cellranger/3.1.0
- - cellranger count --id=module-3.1.0 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
+ - cellranger count --id=module-310 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
artifacts:
name: "$CI_JOB_NAME"
when: always
@@ -117,7 +117,7 @@ module_4.0.0_test:
- tags
script:
- module load cellranger/4.0.0
- - cellranger count --id=module-4.0.0 --transcriptome=/project/apps_database/cellranger/refdata-gex-GRCh38-2020-A --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
+ - cellranger count --id=module-400 --transcriptome=/project/apps_database/cellranger/refdata-gex-GRCh38-2020-A --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
artifacts:
name: "$CI_JOB_NAME"
when: always
@@ -141,7 +141,7 @@ container_2.1.1_test:
- master
- tags
script:
- - singularity run 'docker://bicf/cellranger2.1.1:2.0.0' cellranger count --id=container-2.1.1 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
+ - singularity run 'docker://bicf/cellranger2.1.1:2.0.0' cellranger count --id=container-211 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
artifacts:
name: "$CI_JOB_NAME"
when: always
@@ -163,7 +163,7 @@ container_3.0.2_test:
- master
- tags
script:
- - singularity run 'docker://bicf/cellranger3.0.2:2.0.0' cellranger count --id=container-3.0.2 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
+ - singularity run 'docker://bicf/cellranger3.0.2:2.0.0' cellranger count --id=container-302 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
artifacts:
name: "$CI_JOB_NAME"
when: always
@@ -185,7 +185,7 @@ container_3.1.0_test:
- master
- tags
script:
- - singularity run 'docker://bicf/cellranger3.1.0:2.0.0' cellranger count --id=container-3.1.0 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
+ - singularity run 'docker://bicf/cellranger3.1.0:2.0.0' cellranger count --id=container-310 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
artifacts:
name: "$CI_JOB_NAME"
when: always
@@ -209,7 +209,7 @@ container_4.0.0_test:
- master
- tags
script:
- - singularity run 'docker://bicf/cellranger4.0.0:2.0.0_indev' cellranger count --id=container-4.0.0 --transcriptome=/project/apps_database/cellranger/refdata-gex-GRCh38-2020-A --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
+ - singularity run 'docker://bicf/cellranger4.0.0:2.0.0_indev' cellranger count --id=container-400 --transcriptome=/project/apps_database/cellranger/refdata-gex-GRCh38-2020-A --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
artifacts:
name: "$CI_JOB_NAME"
when: always
--
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