diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 6702c339bcfa941c2abc6ec9e17600af3ec10bdd..1ab01e18d6f07693934961b3356dca81f5a3d4a0 100755 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -46,7 +46,7 @@ module_2.1.1_test: - tags script: - module load cellranger/2.1.1 - - cellranger count --id=module-2.1.1 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2 + - cellranger count --id=module-211 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2 artifacts: name: "$CI_JOB_NAME" when: always @@ -69,7 +69,7 @@ module_3.0.2_test: - tags script: - module load cellranger/3.0.2 - - cellranger count --id=module-3.0.2 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2 + - cellranger count --id=module-302 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2 artifacts: name: "$CI_JOB_NAME" when: always @@ -92,7 +92,7 @@ module_3.1.0_test: - tags script: - module load cellranger/3.1.0 - - cellranger count --id=module-3.1.0 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2 + - cellranger count --id=module-310 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2 artifacts: name: "$CI_JOB_NAME" when: always @@ -117,7 +117,7 @@ module_4.0.0_test: - tags script: - module load cellranger/4.0.0 - - cellranger count --id=module-4.0.0 --transcriptome=/project/apps_database/cellranger/refdata-gex-GRCh38-2020-A --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2 + - cellranger count --id=module-400 --transcriptome=/project/apps_database/cellranger/refdata-gex-GRCh38-2020-A --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2 artifacts: name: "$CI_JOB_NAME" when: always @@ -141,7 +141,7 @@ container_2.1.1_test: - master - tags script: - - singularity run 'docker://bicf/cellranger2.1.1:2.0.0' cellranger count --id=container-2.1.1 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2 + - singularity run 'docker://bicf/cellranger2.1.1:2.0.0' cellranger count --id=container-211 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2 artifacts: name: "$CI_JOB_NAME" when: always @@ -163,7 +163,7 @@ container_3.0.2_test: - master - tags script: - - singularity run 'docker://bicf/cellranger3.0.2:2.0.0' cellranger count --id=container-3.0.2 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2 + - singularity run 'docker://bicf/cellranger3.0.2:2.0.0' cellranger count --id=container-302 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2 artifacts: name: "$CI_JOB_NAME" when: always @@ -185,7 +185,7 @@ container_3.1.0_test: - master - tags script: - - singularity run 'docker://bicf/cellranger3.1.0:2.0.0' cellranger count --id=container-3.1.0 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2 + - singularity run 'docker://bicf/cellranger3.1.0:2.0.0' cellranger count --id=container-310 --transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2 artifacts: name: "$CI_JOB_NAME" when: always @@ -209,7 +209,7 @@ container_4.0.0_test: - master - tags script: - - singularity run 'docker://bicf/cellranger4.0.0:2.0.0_indev' cellranger count --id=container-4.0.0 --transcriptome=/project/apps_database/cellranger/refdata-gex-GRCh38-2020-A --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2 + - singularity run 'docker://bicf/cellranger4.0.0:2.0.0_indev' cellranger count --id=container-400 --transcriptome=/project/apps_database/cellranger/refdata-gex-GRCh38-2020-A --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2 artifacts: name: "$CI_JOB_NAME" when: always