Commit d02ecf59 authored by Venkat Malladi's avatar Venkat Malladi

Fix path to design file so that its passed ocorrectly for astrocyte.

parent 66fd50c5
Pipeline #7392 passed with stages
in 9 seconds
...@@ -2,7 +2,7 @@ ...@@ -2,7 +2,7 @@
All notable changes to this project will be documented in this file. All notable changes to this project will be documented in this file.
## [publish_2.0.2 ] - 2020-06-21 ## [publish_2.0.3 ] - 2020-06-21
### Fixed ### Fixed
- Removed biosample, factor, treatment from design file - Removed biosample, factor, treatment from design file
- Updated documentation - Updated documentation
......
...@@ -71,7 +71,7 @@ readsList = Channel ...@@ -71,7 +71,7 @@ readsList = Channel
// Define regular variables // Define regular variables
pairedEnd = params.pairedEnd pairedEnd = params.pairedEnd
blacklist = params.blacklist blacklist = params.blacklist
designFile = params.designFile designFile = Channel.fromPath(params.designFile)
genomeSize = params.genomeSize genomeSize = params.genomeSize
chromSizes = params.chromSizes chromSizes = params.chromSizes
outDir = params.outDir outDir = params.outDir
...@@ -100,7 +100,7 @@ process trackStart { ...@@ -100,7 +100,7 @@ process trackStart {
"astrocyte": ${params.astrocyte}, \ "astrocyte": ${params.astrocyte}, \
"status": "started", \ "status": "started", \
"nextflowVersion": "${workflow.nextflow.version}", \ "nextflowVersion": "${workflow.nextflow.version}", \
"pipelineVersion": "2.0.2", \ "pipelineVersion": "2.0.3", \
"ci": ${params.ci}, \ "ci": ${params.ci}, \
"dev": ${params.dev}}' \ "dev": ${params.dev}}' \
"https://xku43pcwnf.execute-api.us-east-1.amazonaws.com/ProdDeploy/pipeline-tracking" "https://xku43pcwnf.execute-api.us-east-1.amazonaws.com/ProdDeploy/pipeline-tracking"
......
...@@ -25,7 +25,7 @@ manifest { ...@@ -25,7 +25,7 @@ manifest {
name = 'atacseq_analysis' name = 'atacseq_analysis'
description = 'BICF ATAC-seq Analysis Workflow.' description = 'BICF ATAC-seq Analysis Workflow.'
homePage = 'https://git.biohpc.swmed.edu/BICF/Astrocyte/atacseq_analysis' homePage = 'https://git.biohpc.swmed.edu/BICF/Astrocyte/atacseq_analysis'
version = '2.0.2' version = '2.0.3'
mainScript = 'main.nf' mainScript = 'main.nf'
nextflowVersion = '>=0.31.0' nextflowVersion = '>=0.31.0'
} }
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