From d02ecf590ec1e20460d7c8b5dc9c322339653e15 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Sun, 21 Jun 2020 15:07:05 -0500
Subject: [PATCH] Fix path to design file so that its passed ocorrectly for
 astrocyte.

---
 CHANGELOG.md             | 2 +-
 workflow/main.nf         | 4 ++--
 workflow/nextflow.config | 2 +-
 3 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index e887089..c460776 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -2,7 +2,7 @@
 
 All notable changes to this project will be documented in this file.
 
-## [publish_2.0.2 ] - 2020-06-21
+## [publish_2.0.3 ] - 2020-06-21
 ### Fixed
  - Removed biosample, factor, treatment from design file
  - Updated documentation
diff --git a/workflow/main.nf b/workflow/main.nf
index 467c8ab..ec211cc 100644
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -71,7 +71,7 @@ readsList = Channel
 // Define regular variables
 pairedEnd = params.pairedEnd
 blacklist = params.blacklist
-designFile = params.designFile
+designFile = Channel.fromPath(params.designFile)
 genomeSize = params.genomeSize
 chromSizes = params.chromSizes
 outDir = params.outDir
@@ -100,7 +100,7 @@ process trackStart {
       "astrocyte": ${params.astrocyte}, \
       "status": "started", \
       "nextflowVersion": "${workflow.nextflow.version}", \
-      "pipelineVersion": "2.0.2", \
+      "pipelineVersion": "2.0.3", \
       "ci": ${params.ci}, \
       "dev": ${params.dev}}' \
   "https://xku43pcwnf.execute-api.us-east-1.amazonaws.com/ProdDeploy/pipeline-tracking"
diff --git a/workflow/nextflow.config b/workflow/nextflow.config
index 2f6a5dc..55c6fe3 100644
--- a/workflow/nextflow.config
+++ b/workflow/nextflow.config
@@ -25,7 +25,7 @@ manifest {
   name = 'atacseq_analysis'
   description = 'BICF ATAC-seq Analysis Workflow.'
   homePage = 'https://git.biohpc.swmed.edu/BICF/Astrocyte/atacseq_analysis'
-  version = '2.0.2'
+  version = '2.0.3'
   mainScript = 'main.nf'
   nextflowVersion = '>=0.31.0'
 }
-- 
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