Fix path to design file so that its passed ocorrectly for astrocyte.

CHANGELOG.md

@@ -2,7 +2,7 @@
 
 All notable changes to this project will be documented in this file.
 
-## [publish_2.0.2 ] - 2020-06-21
+## [publish_2.0.3 ] - 2020-06-21
 ### Fixed
  - Removed biosample, factor, treatment from design file
  - Updated documentation

workflow/main.nf

@@ -71,7 +71,7 @@ readsList = Channel
 // Define regular variables
 pairedEnd = params.pairedEnd
 blacklist = params.blacklist
-designFile = params.designFile
+designFile = Channel.fromPath(params.designFile)
 genomeSize = params.genomeSize
 chromSizes = params.chromSizes
 outDir = params.outDir
@@ -100,7 +100,7 @@ process trackStart {
       "astrocyte": ${params.astrocyte}, \
       "status": "started", \
       "nextflowVersion": "${workflow.nextflow.version}", \
-      "pipelineVersion": "2.0.2", \
+      "pipelineVersion": "2.0.3", \
       "ci": ${params.ci}, \
       "dev": ${params.dev}}' \
   "https://xku43pcwnf.execute-api.us-east-1.amazonaws.com/ProdDeploy/pipeline-tracking"

workflow/nextflow.config

@@ -25,7 +25,7 @@ manifest {
   name = 'atacseq_analysis'
   description = 'BICF ATAC-seq Analysis Workflow.'
   homePage = 'https://git.biohpc.swmed.edu/BICF/Astrocyte/atacseq_analysis'
-  version = '2.0.2'
+  version = '2.0.3'
   mainScript = 'main.nf'
   nextflowVersion = '>=0.31.0'
 }