TAD aware Regulatory Network Construction (TReNCo). The package provides scripts for constructing cell-type specific mouse TF-gene networks.
De novo circular RNA detection from circular viral genome
Multiple Fisher's exact tests for differential alternative splicing detection using RNA-seq data
Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies
This project is the astrocyte project to do variant analysis with BAMs generated in the RNASeq Differential expression analysis pipeline.
This is the conversion of the BICF RNASeq pipeline into the nextflow framework.
The general gene expression analysis pipeline of 10X Visium data