Commits · 5d55b00705df4dcba10c3c8471b63de2d1c46b93 · NGS CLIA Lab / process_scripts

Aug 17, 2019
- add idtseeker · 5d55b007
  Brandi Cantarel authored 5 years ago
  
  publish_0.2.0
  
  5d55b007
Aug 13, 2019
- moving out normal/target initialization · e068e832
  Brandi Cantarel authored 5 years ago
  
  e068e832
- updating cnvkit if statement not to override input · 7938c580
  Brandi Cantarel authored 5 years ago
  
  7938c580
Jul 12, 2019
- qc skip when not necessary · 41554a4d
  Brandi Cantarel authored 5 years ago
  
  41554a4d
Jul 08, 2019
- add skip to qc steps when not necessary · 283e3ecd
  Brandi Cantarel authored 5 years ago
  
  283e3ecd
Jun 27, 2019
- update gene fusion 2 answer script · d8b85458
  Brandi Cantarel authored 5 years ago
  
  d8b85458
Jun 17, 2019
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts · 31faa289
  Brandi Cantarel authored 5 years ago
  
  31faa289
- bug fixes new workflow · 920b85d5
  Brandi Cantarel authored 5 years ago
  
  920b85d5
May 30, 2019
- Add LICENSE · d592d66a
  Brandi Cantarel authored 5 years ago
  
  d592d66a
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts · 4eef99e5
  Brandi Cantarel authored 5 years ago
  
  4eef99e5
- round counts dea.R · 5000ba2b
  Brandi Cantarel authored 5 years ago
  
  5000ba2b
May 29, 2019
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts · 0270fd9c
  Brandi Cantarel authored 5 years ago
  
  0270fd9c
May 22, 2019
- update starfusion · a484bedc
  Brandi Cantarel authored 5 years ago
  
  a484bedc
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts · 27713ee1
  Brandi Cantarel authored 5 years ago
  
  27713ee1
- removing FixMate Line · 2f09a2d6
  Brandi Cantarel authored 5 years ago
  
  2f09a2d6
May 21, 2019
- Merge branch 'idt_devel' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts · 28f1734c
  Brandi Cantarel authored 5 years ago
  
  28f1734c
- more nodes strelka · a2d0dca9
  Brandi Cantarel authored 5 years ago
  
  a2d0dca9
May 20, 2019
- bug fixes · c49b6ffe
  Brandi Cantarel authored 5 years ago
  
  c49b6ffe
May 15, 2019
- update norm/uniform/annot · 98be9ebf
  Brandi Cantarel authored 5 years ago
  
  98be9ebf
May 10, 2019
- updates · dd196115
  Brandi Cantarel authored 5 years ago
  
  dd196115
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts · ca1da1cf
  Brandi Cantarel authored 5 years ago
  
  ca1da1cf
- updating gatk · 7c95f85a
  Brandi Cantarel authored 5 years ago
  
  7c95f85a
May 08, 2019
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts into idt_devel · 4b524cbf
  Brandi Cantarel authored 5 years ago
  
  4b524cbf
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts · 23bf03b3
  Brandi Cantarel authored 5 years ago
  
  23bf03b3
- minding my ps and qs · 20896533
  Brandi Cantarel authored 5 years ago
  
  20896533
May 07, 2019
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts into idt_devel · 02708607
  Brandi Cantarel authored 5 years ago
  
  02708607
- update union and snsp with mnv->snv · 1588fae4
  Brandi Cantarel authored 5 years ago
  
  1588fae4
May 06, 2019
- update markdups · d6c6fbbf
  Brandi Cantarel authored 5 years ago
  
  d6c6fbbf
May 04, 2019
- adding dependencies · 4b2bd485
  Brandi Cantarel authored 5 years ago
  
  4b2bd485
May 01, 2019
- merging master branch changes · ca4a97e2
  Brandi Cantarel authored 5 years ago
  
  ca4a97e2
- updating workflow · 4f642d9c
  Brandi Cantarel authored 5 years ago
  
  4f642d9c
Apr 26, 2019
- Merge branch '1-deafix-heatmap' into 'master' · 56d8030e
  Venkat Malladi authored 5 years ago
```
fix for 1-deafix-heatmap

Closes #1

See merge request BICF/Astrocyte/process_scripts!5
```
  56d8030e
Apr 19, 2019
- fix for 1-deafix-heatmap · 93d52e97
  Holly Ruess authored 5 years ago
  
  93d52e97
Apr 16, 2019
- adding rmdup bamqc · 9f6d0f8f
  Brandi Cantarel authored 5 years ago
  
  9f6d0f8f
Apr 11, 2019
- updates for version3 · c6d8d42c
  Brandi Cantarel authored 5 years ago
  
  c6d8d42c
Apr 04, 2019
- update filter pindel.pl · f98571cb
  Brandi Cantarel authored 5 years ago
  
  f98571cb
Mar 29, 2019
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts into idt_devel · f14a813e
  Brandi Cantarel authored 5 years ago
  
  f14a813e
- adding gatk4 · 2036e8e1
  Brandi Cantarel authored 5 years ago
  
  2036e8e1
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts · f1aeb7cf
  Brandi Cantarel authored 5 years ago
  
  f1aeb7cf
- adding OncoKB, markdups · a7cafc91
  Brandi Cantarel authored 5 years ago
  
  a7cafc91