Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts (23bf03b3) · Commits · NGS CLIA Lab / process_scripts · GitLab

Skip to content

GitLab

Explore

Sign in

Primary navigation

Project

P

process_scripts
- Activity
- Members
- Labels
- Issues
  0
- Issue boards
- Milestones
- Iterations
- Wiki
- Requirements
- Releases
- Container Registry
- Environments
- Incidents
- Service Desk

Snippets Groups Projects

NGS CLIA Lab
process_scripts
Commits
23bf03b3

Commit 23bf03b3 authored 5 years ago by

Brandi Cantarel

Downloads
- Plain Diff

Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts

parents 20896533 d6c6fbbf

Branches

Tags

No related merge requests found

Changes 12

Hide whitespace changes

Inline Side-by-side

Showing

alignment/bamqc.sh 9 additions, 1 deletion

alignment/bamqc.sh
alignment/dnaseqalign.sh 19 additions, 9 deletions

alignment/dnaseqalign.sh
alignment/markdups.sh 2 additions, 5 deletions

alignment/markdups.sh
alignment/starfusion.sh 1 addition, 1 deletion

alignment/starfusion.sh
genect_rnaseq/dea.R 4 additions, 2 deletions

genect_rnaseq/dea.R
variants/cnvkit.sh 7 additions, 3 deletions

variants/cnvkit.sh
variants/filter_cnvkit.pl 6 additions, 0 deletions

variants/filter_cnvkit.pl
variants/filter_pindel.pl 1 addition, 0 deletions

variants/filter_pindel.pl
variants/gatkrunner.sh 20 additions, 12 deletions

variants/gatkrunner.sh
variants/germline_vc.sh 26 additions, 22 deletions

variants/germline_vc.sh
variants/somatic_vc.sh 20 additions, 36 deletions

variants/somatic_vc.sh
variants/unionvcf.pl 41 additions, 35 deletions

variants/unionvcf.pl

with 156 additions and 126 deletions

0% or .

You are about to add 0 people to the discussion. Proceed with caution.

Finish editing this message first!

Please register or sign in to comment