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Commit f6606dde authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Specify convert file to use

parent 299caa0a
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workflow/scrna-seq_imgen.nf
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...@@ -49,7 +49,7 @@ renameGenesScript = Channel.fromPath("$baseDir/scripts/renameGenes.R") ...@@ -49,7 +49,7 @@ renameGenesScript = Channel.fromPath("$baseDir/scripts/renameGenes.R")
plotIdentGroupScript = Channel.fromPath("$baseDir/scripts/plotIdentGroup.R") plotIdentGroupScript = Channel.fromPath("$baseDir/scripts/plotIdentGroup.R")
plotFeatureScript = Channel.fromPath("$baseDir/scripts/plotFeature.R") plotFeatureScript = Channel.fromPath("$baseDir/scripts/plotFeature.R")
plotViolinBoxScript = Channel.fromPath("$baseDir/scripts/plotViolinBox.R") plotViolinBoxScript = Channel.fromPath("$baseDir/scripts/plotViolinBox.R")
convertFiles = Channel.fromPath("$baseDir/files/*.txt") convertFiles = Channel.fromPath("$baseDir/files/${convert}.to.NCBI.txt")
if (params.s3) { if (params.s3) {
if (params.consortium) { if (params.consortium) {
......
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