diff --git a/workflow/scrna-seq_imgen.nf b/workflow/scrna-seq_imgen.nf index 09c62cbcb84400275cf53b12b34bf4eb57b292db..c1ee7c2b890ac6ba7506ec89225d72dacda07735 100644 --- a/workflow/scrna-seq_imgen.nf +++ b/workflow/scrna-seq_imgen.nf @@ -49,7 +49,7 @@ renameGenesScript = Channel.fromPath("$baseDir/scripts/renameGenes.R") plotIdentGroupScript = Channel.fromPath("$baseDir/scripts/plotIdentGroup.R") plotFeatureScript = Channel.fromPath("$baseDir/scripts/plotFeature.R") plotViolinBoxScript = Channel.fromPath("$baseDir/scripts/plotViolinBox.R") -convertFiles = Channel.fromPath("$baseDir/files/*.txt") +convertFiles = Channel.fromPath("$baseDir/files/${convert}.to.NCBI.txt") if (params.s3) { if (params.consortium) {