Merge requests · GUDMAP_RBK / RNA-seq

Merge trains

WIP Resolve "Put reference building script into Snippets" 10 of 12 checklist items completed

!52 · created Dec 07, 2020 by Jonathan Gesell 1.0.0
Test documentation support
- Closed
updated Jan 07, 2021
WIP: Resolve "Change yes/no metadata to bool" 3 of 12 checklist items completed

!49 · created Nov 12, 2020 by Venkat Malladi 1.0.0
CodeReview Doing
- Closed
- 1
updated Jan 07, 2021
v0.0.2

!39 · created Aug 15, 2020 by Gervaise Henry v0.0.2 master
updated Aug 15, 2020
v0.0.1

!37 · created Aug 11, 2020 by Gervaise Henry v0.0.1 master
updated Aug 11, 2020
Update rna-seq.nf

!95 · created Jul 27, 2021 by Gervaise Henry v2.0.1 master
updated Jul 27, 2021
Update rna-seq.nf 4 of 4 checklist items completed

!88 · created Jul 05, 2021 by Jonathan Gesell v2.0.1
To Do bug pipeline
- Merged
- 2
- Approved
updated Jul 15, 2021
Update nextflow configs to include aws 1 of 7 checklist items completed

!9 · created Jan 14, 2020 by Gervaise Henry v0.0.1
updated Jan 14, 2020
Update.containers 7 of 7 checklist items completed

!73 · created Mar 11, 2021 by Gervaise Henry
updated Mar 12, 2021
Update.containers 6 of 6 checklist items completed

!72 · created Mar 08, 2021 by Gervaise Henry v2.0.0
updated Mar 09, 2021
Update consistency checks to be fully in python. 4 of 10 checklist items completed

!46 · created Oct 31, 2020 by Venkat Malladi FUTURE Version
CI/CD To Do
- Merged
- 5
- Approved
updated Nov 11, 2020
Update changelog

!96 · created Jul 27, 2021 by Gervaise Henry v2.0.1 master
updated Jul 27, 2021
Track.pipeline 0 of 8 checklist items completed

!29 · created Apr 25, 2020 by Gervaise Henry v0.0.1
enhancement
updated Apr 25, 2020
Test failure. 5 of 10 checklist items completed

!47 · created Oct 31, 2020 by Venkat Malladi 1.0.0
Doing
- Merged
- 2
- Approved
updated Nov 10, 2020
Seqwho 10 of 10 checklist items completed

!71 · created Feb 24, 2021 by Gervaise Henry
- Merged
- 8
- Approved
updated Mar 05, 2021
Revert "Remove min nextflow version for 0.31.0 test"

!20 · created Feb 14, 2020 by Gervaise Henry
updated Feb 14, 2020
Resolve "Update design docs" 5 of 5 checklist items completed

!21 · created Feb 17, 2020 by Gervaise Henry v0.0.1
Doing documentation
- Merged
- 2
- 1
updated Feb 18, 2020
Resolve "Server changing... need to change .insert calls" 4 of 4 checklist items completed

!92 · created Jul 22, 2021 by Gervaise Henry v2.0.1
To Do confirmed critical data-hub pipeline
- Merged
- Approved
updated Jul 22, 2021
Resolve "samtools sort: couldn't allocate memory for bam_mem" 5 of 5 checklist items completed

!64 · created Jan 20, 2021 by Gervaise Henry v2.0.0
Doing bug critical
- Merged
- Approved
updated Jan 20, 2021
Resolve "process_RSeQC" 4 of 4 checklist items completed

!23 · created Mar 14, 2020 by Gervaise Henry v0.0.1
Doing
- Merged
- 1
updated Mar 15, 2020
Resolve "process_qc" 6 of 8 checklist items completed

!33 · created Jul 14, 2020 by Gervaise Henry v0.0.1
Doing
updated Jul 15, 2020