Merge requests · GUDMAP_RBK / RNA-seq

Resolve "process_getData"

!1 · created Oct 11, 2019 by Gervaise Henry v0.0.1
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- 0
updated Nov 04, 2019
Resolve "process_getData"

!2 · created Nov 04, 2019 by Gervaise Henry v0.0.1
- MERGED
- 0
updated Nov 04, 2019
Added trimming step using trimGalore and logging. 1 of 7 tasks completed

!3 · created Nov 11, 2019 by Jonathan Gesell v0.0.1 Doing
- MERGED
- 0
updated Nov 14, 2019
Develop 1 of 7 tasks completed

!4 · created Nov 15, 2019 by Gervaise Henry v0.0.1 2-process_createManifest
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- 0
updated Nov 15, 2019
Resolve "Add Unit Tests for splitData and getData processes" 3 of 3 tasks completed

!5 · created Dec 03, 2019 by Jeremy Mathews v0.0.1 CI/CD Doing
- MERGED
- 0
updated Dec 03, 2019
Develop

!6 · created Dec 11, 2019 by Gervaise Henry 15-auto.bagit.download
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- 0
updated Dec 11, 2019
Resolve "Add CI for Trim" 0 of 7 tasks completed

!7 · created Jan 14, 2020 by Gervaise Henry v0.0.1 CI/CD Doing enhancement
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- 0
updated Jan 14, 2020
Resolve "Add automated download of bagit through deriva" 0 of 7 tasks completed

!8 · created Jan 14, 2020 by Gervaise Henry v0.0.1 Test enhancement
- MERGED
- 0
updated Jan 14, 2020
Update nextflow configs to include aws 1 of 7 tasks completed

!9 · created Jan 14, 2020 by Gervaise Henry v0.0.1
- MERGED
- 0
updated Jan 14, 2020
Resolve "Add integration CI test" 1 of 7 tasks completed

!10 · created Jan 15, 2020 by Gervaise Henry v0.0.1 CI/CD Doing
- MERGED
- 0
updated Jan 15, 2020
Develop

!11 · created Jan 17, 2020 by Gervaise Henry 2-process_createManifest
- MERGED
- 0
updated Jan 17, 2020
Resolve "Make scripts input files for processes" 0 of 7 tasks completed

!12 · created Jan 18, 2020 by Gervaise Henry v0.0.1
- MERGED
- 0
updated Jan 18, 2020
Develop

!13 · created Jan 18, 2020 by Gervaise Henry 2-process_createManifest
- MERGED
- 0
updated Jan 18, 2020
Resolve "process_createManifest" 3 of 3 tasks completed

!14 · created Jan 18, 2020 by Gervaise Henry v0.0.1 Doing
- MERGED
- 2
updated Jan 21, 2020
Resolve "process_align" 0 of 4 tasks completed

!15 · created Jan 21, 2020 by Jonathan Gesell v0.0.1 CodeReview Doing
- MERGED
- 2
updated Jan 28, 2020
Resolve "process_getRef" 3 of 3 tasks completed

!16 · created Jan 30, 2020 by Gervaise Henry v0.0.1 Doing
- MERGED
- 6
updated Jan 30, 2020
Resolve "process_dedup" 3 of 3 tasks completed

!17 · created Jan 30, 2020 by Jonathan Gesell v0.0.1 CodeReview Test
- MERGED
- 0
updated Feb 02, 2020
Resolve "process_fastqc" 3 of 3 tasks completed

!18 · created Feb 03, 2020 by Gervaise Henry v0.0.1 Doing
- MERGED
- 4
updated Feb 04, 2020
Revert "Remove min nextflow version for 0.31.0 test"

!20 · created Feb 14, 2020 by Gervaise Henry
- MERGED
- 0
updated Feb 14, 2020
Resolve "process_makeBigWig" 3 of 3 tasks completed

!19 · created Feb 13, 2020 by Jonathan Gesell v0.0.1 CodeReview Doing
- MERGED
- 1
updated Feb 15, 2020