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  • GUDMAP_RBK
  • RNA-seqRNA-seq
  • Merge requests

  • Open 0
  • Merged 96
  • Closed 4
  • All 100
  • Priority Created date Updated date Milestone due date Popularity Label priority Merged date Closed date Title
  • Resolve "process_getData"
    !1 · created Oct 11, 2019 by Gervaise Henry   v0.0.1
    • MERGED
    • 0
    updated Nov 04, 2019
  • Resolve "process_getData"
    !2 · created Nov 04, 2019 by Gervaise Henry   v0.0.1
    • MERGED
    • 0
    updated Nov 04, 2019
  • Added trimming step using trimGalore and logging.   1 of 7 tasks completed
    !3 · created Nov 11, 2019 by Jonathan Gesell   v0.0.1   Doing
    • MERGED
    • 0
    updated Nov 14, 2019
  • Develop   1 of 7 tasks completed
    !4 · created Nov 15, 2019 by Gervaise Henry   v0.0.1   2-process_createManifest
    • MERGED
    • 0
    updated Nov 15, 2019
  • Resolve "Add Unit Tests for splitData and getData processes"   3 of 3 tasks completed
    !5 · created Dec 03, 2019 by Jeremy Mathews   v0.0.1   CI/CD Doing
    • MERGED
    • 0
    updated Dec 03, 2019
  • Develop
    !6 · created Dec 11, 2019 by Gervaise Henry   15-auto.bagit.download
    • MERGED
    • 0
    updated Dec 11, 2019
  • Resolve "Add CI for Trim"   0 of 7 tasks completed
    !7 · created Jan 14, 2020 by Gervaise Henry   v0.0.1   CI/CD Doing enhancement
    • MERGED
    • 0
    updated Jan 14, 2020
  • Resolve "Add automated download of bagit through deriva"   0 of 7 tasks completed
    !8 · created Jan 14, 2020 by Gervaise Henry   v0.0.1   Test enhancement
    • MERGED
    • 0
    updated Jan 14, 2020
  • Update nextflow configs to include aws   1 of 7 tasks completed
    !9 · created Jan 14, 2020 by Gervaise Henry   v0.0.1
    • MERGED
    • 0
    updated Jan 14, 2020
  • Resolve "Add integration CI test"   1 of 7 tasks completed
    !10 · created Jan 15, 2020 by Gervaise Henry   v0.0.1   CI/CD Doing
    • MERGED
    • 0
    updated Jan 15, 2020
  • Develop
    !11 · created Jan 17, 2020 by Gervaise Henry   2-process_createManifest
    • MERGED
    • 0
    updated Jan 17, 2020
  • Resolve "Make scripts input files for processes"   0 of 7 tasks completed
    !12 · created Jan 18, 2020 by Gervaise Henry   v0.0.1
    • MERGED
    • 0
    updated Jan 18, 2020
  • Develop
    !13 · created Jan 18, 2020 by Gervaise Henry   2-process_createManifest
    • MERGED
    • 0
    updated Jan 18, 2020
  • Resolve "process_createManifest"   3 of 3 tasks completed
    !14 · created Jan 18, 2020 by Gervaise Henry   v0.0.1   Doing
    • MERGED
    • 2
    updated Jan 21, 2020
  • Resolve "process_align"   0 of 4 tasks completed
    !15 · created Jan 21, 2020 by Jonathan Gesell   v0.0.1   CodeReview Doing
    • MERGED
    • 2
    updated Jan 28, 2020
  • Resolve "process_getRef"   3 of 3 tasks completed
    !16 · created Jan 30, 2020 by Gervaise Henry   v0.0.1   Doing
    • MERGED
    • 6
    updated Jan 30, 2020
  • Resolve "process_dedup"   3 of 3 tasks completed
    !17 · created Jan 30, 2020 by Jonathan Gesell   v0.0.1   CodeReview Test
    • MERGED
    • 0
    updated Feb 02, 2020
  • Resolve "process_fastqc"   3 of 3 tasks completed
    !18 · created Feb 03, 2020 by Gervaise Henry   v0.0.1   Doing
    • MERGED
    • 4
    updated Feb 04, 2020
  • Revert "Remove min nextflow version for 0.31.0 test"
    !20 · created Feb 14, 2020 by Gervaise Henry
    • MERGED
    • 0
    updated Feb 14, 2020
  • Resolve "process_makeBigWig"   3 of 3 tasks completed
    !19 · created Feb 13, 2020 by Jonathan Gesell   v0.0.1   CodeReview Doing
    • MERGED
    • 1
    updated Feb 15, 2020
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