Merge requests · GUDMAP_RBK / RNA-seq

Merge trains

Resolve "failPreExecution not running on fastq error" 9 of 9 checklist items completed

!60 · created Jan 14, 2021 by Gervaise Henry v1.0.1
To Do bug confirmed critical discussion pipeline
updated Jan 14, 2021
Fix complete/fail date tracking passing

!59 · created Jan 12, 2021 by Gervaise Henry 1.0.0 master
updated Jan 12, 2021
Develop

!58 · created Jan 12, 2021 by Gervaise Henry master
updated Jan 12, 2021
Prep of 1.0.0 release 11 of 12 checklist items completed

!57 · created Jan 08, 2021 by Venkat Malladi 1.0.0
Doing
updated Jan 12, 2021
Resolve "Detect error in inferMetadata for tracking" 10 of 12 checklist items completed

!56 · created Jan 07, 2021 by Gervaise Henry 1.0.0
Test
- Merged
- Approved
updated Jan 08, 2021
Resolve "Add tool version badges"

!55 · created Dec 30, 2020 by Gervaise Henry 1.0.0
Doing enhancement
updated Dec 30, 2020
Resolve "Add an option to not upload"

!54 · created Dec 14, 2020 by Gervaise Henry 1.0.0 11-deriva.upload
To Do
updated Dec 17, 2020
Resolve "process_derivaUpload" 11 of 11 checklist items completed

!53 · created Dec 14, 2020 by Gervaise Henry 1.0.0
Doing
- Merged
- 17
- Approved
updated Dec 30, 2020
WIP Resolve "Put reference building script into Snippets" 10 of 12 checklist items completed

!52 · created Dec 07, 2020 by Jonathan Gesell 1.0.0
Test documentation support
- Closed
updated Jan 07, 2021
Add run details to output bag

!51 · created Nov 19, 2020 by Jeremy Mathews 1.0.0
Doing
- Merged
- 7
- Approved
updated Nov 20, 2020
Add back parallel trim step. Moved fastqc step after trim. 5 of 12 checklist items completed

!50 · created Nov 12, 2020 by Venkat Malladi FUTURE Version
To Do enhancement
- Merged
- 8
- Approved
updated Nov 19, 2020
WIP: Resolve "Change yes/no metadata to bool" 3 of 12 checklist items completed

!49 · created Nov 12, 2020 by Venkat Malladi 1.0.0
CodeReview Doing
- Closed
- 1
updated Jan 07, 2021
Resolve "Output tool version to report in multiqc" 7 of 12 checklist items completed

!48 · created Nov 09, 2020 by Venkat Malladi 1.0.0
CI/CD Doing discussion
- Merged
- 6
updated Nov 11, 2020
Test failure. 5 of 10 checklist items completed

!47 · created Oct 31, 2020 by Venkat Malladi 1.0.0
Doing
- Merged
- 2
- Approved
updated Nov 10, 2020
Update consistency checks to be fully in python. 4 of 10 checklist items completed

!46 · created Oct 31, 2020 by Venkat Malladi FUTURE Version
CI/CD To Do
- Merged
- 5
- Approved
updated Nov 11, 2020
Resolve "Move references to GUDMAP/RBK" 8 of 8 checklist items completed

!45 · created Sep 14, 2020 by Gervaise Henry 1.0.0
Doing critical
- Merged
- 3
updated Sep 14, 2020
Add started time to multiqc #77

!44 · created Aug 31, 2020 by Gervaise Henry
updated Sep 01, 2020
Develop

!43 · created Aug 27, 2020 by Gervaise Henry 0.0.3 master
updated Aug 27, 2020
0.0.3 10 of 10 checklist items completed

!42 · created Aug 24, 2020 by Gervaise Henry 0.0.3
updated Aug 27, 2020
Develop

!41 · created Aug 20, 2020 by Gervaise Henry v0.0.2 master
updated Aug 20, 2020