Env.ci

Make environment tests for DNAnexus and AWS

PR checklist

• This comment contains a description of changes (with reason)
• If you've fixed a bug or added code that should be tested, add tests!
• Documentation in docs is updated
• Replace dag.png with the most recent CI pipeline integrated_pe artifact
• [ ] Replace software_versions_mqc.yaml with the most recent CI pipeline generateVersions artifact
• [ ] Replace software_references_mqc.yaml with the most recent CI pipeline generateVersions artifact
• CHANGELOG.md is updated
• README.md is updated
• [ ] LICENSE.md is updated with new contributors
• [ ] Docker images moved to production release and changed in pipeline
• [ ] Docker images used in the CI unit tests match those used in pipeline

• ~~[ ] Close issue~~ Closes #

/cc @ghenry @venkat.malladi

.gitlab-ci.yml

@@ -1037,8 +1037,8 @@ dnanexus:
         > dx.log
     - >
       jobID=$(cat dx.log | grep -oP "Job ID: \K.*")
-    - dx watch ${jobID}
-    - status=$(dx find executions --id ${jobID} --state failed --brief-auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace})
+    - dx watch ${jobID} -auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace}
+    - status=$(dx find executions --id ${jobID} --state failed --brief -auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace})
     - >
       if [ ${status} == "" ]
       then