Env.ci (!75) · Merge requests · GUDMAP_RBK / RNA-seq

Merged Env.ci

env.ci into develop

Merged Gervaise Henry requested to merge env.ci into develop 3 years ago

Mar 19, 2021
- Add back consistent test · 4bf36dab
  Gervaise Henry authored 3 years ago
  
  4bf36dab
- Add note in readme · 09f0922a
  Gervaise Henry authored 3 years ago
  
  09f0922a
- Fix aws batch submit json localtion · 3b4e91d2
  Gervaise Henry authored 3 years ago
  
  3b4e91d2
- Finalize aws env ci + docs · 09bd8e2b
  Gervaise Henry authored 3 years ago
  
  09bd8e2b
- Trim whitespace from aws status · 7d1ab439
  Gervaise Henry authored 3 years ago
  
  7d1ab439
- Temp remove aws check for failed · a6529852
  Gervaise Henry authored 3 years ago
  
  a6529852
- Try to fix the aws succeeded test · 0432c2a7
  Gervaise Henry authored 3 years ago
  
  0432c2a7
- Downgrade alignData for dnanexus and aws · 35aaa9d1
  Gervaise Henry authored 3 years ago
  
  35aaa9d1
Mar 18, 2021
- Downgrade alignData mem requirement to 64G in dnanexus and aws configs · aa884fb9
  Gervaise Henry authored 3 years ago
  
  aa884fb9
- Resove develop:env-ci merge conflict · ed1e0eb5
  Gervaise Henry authored 3 years ago
  
  ed1e0eb5
- Change aws status check sleep to 5 mins · f9e5dfd2
  Gervaise Henry authored 3 years ago
  
  f9e5dfd2
- Re-split exports · 738130f8
  Gervaise Henry authored 3 years ago
  
  738130f8
- Try to fix batch submit command · 145b5e6c
  Gervaise Henry authored 3 years ago
  
  145b5e6c
- Downgrade aws cli in ci · 95e76ad2
  Gervaise Henry authored 3 years ago
  
  95e76ad2
- Split aws env ci steps · 9c6cd2bf
  Gervaise Henry authored 3 years ago
  
  9c6cd2bf
- Fic ci lint · 0d9caefa
  Gervaise Henry authored 3 years ago
  
  0d9caefa
- Add aws env test to ci · 53d663a8
  Gervaise Henry authored 3 years ago
  
  53d663a8
- Fix experiment settings output · aa7935fa
  Gervaise Henry authored 3 years ago
  
  aa7935fa
- Make dummy R2 fastq if none present · 4726f503
  Gervaise Henry authored 3 years ago
  
  4726f503
- Remove space from experiment settings output file · d28de7d1
  Gervaise Henry authored 3 years ago
  
  d28de7d1
- Fix aws config · 932cefd3
  Gervaise Henry authored 3 years ago
  
  932cefd3
- Add aws profile · 6da7a31c
  Gervaise Henry authored 3 years ago
  
  6da7a31c
- Fix dnanexus.config · 515b0f10
  Gervaise Henry authored 3 years ago
  
  515b0f10
Mar 09, 2021
- Fix dx status check · 6afd7f22
  Gervaise Henry authored 4 years ago
  
  6afd7f22
- Change dx env ci if to single line · f82b6699
  Gervaise Henry authored 4 years ago
  
  f82b6699
- Change xsmall fastqs to 10K · 791fd852
  Gervaise Henry authored 4 years ago
  
  791fd852
Mar 08, 2021
- Update dnanexus badge messages · f1115368
  Gervaise Henry authored 4 years ago
  
  f1115368
- Remove all input dx files · c8e1503d
  Gervaise Henry authored 4 years ago
  
  c8e1503d
- Make xsmall fastq to 25K · 272afd34
  Gervaise Henry authored 4 years ago
  
  272afd34
- Fix dx's · 5dca94bb
  Gervaise Henry authored 4 years ago
  
  5dca94bb
- Fix xsmall fastqs · 2b746c8c
  Gervaise Henry authored 4 years ago
  
  2b746c8c
- Fix dx · c3d6aad0
  Gervaise Henry authored 4 years ago
  
  c3d6aad0
- Remove dx env overrides for dx find · 41c01ca1
  Gervaise Henry authored 4 years ago
  
  41c01ca1
- Add dx env overrides for dx watch and find · 0a357886
  Gervaise Henry authored 4 years ago
  
  0a357886
- Make dummy env badge dir if case of emergencies · 70563bcd
  Gervaise Henry authored 4 years ago
  
  70563bcd
- Fix ci lint · ba6c4b9e
  Gervaise Henry authored 4 years ago
  
  ba6c4b9e
- Add test for failed dx run · b418e9c9
  Gervaise Henry authored 4 years ago
  
  b418e9c9
- Fix - in not-tested · 6dc30eb9
  Gervaise Henry authored 4 years ago
  
  6dc30eb9
- Create untested badges for env if not tested · a3a43a5d
  Gervaise Henry authored 4 years ago
  
  a3a43a5d
Mar 05, 2021
- Add allow fail to env · 31ee1c24
  Gervaise Henry authored 4 years ago
  
  31ee1c24
- Add schedules to badges and pages · a729a3f0
  Gervaise Henry authored 4 years ago
  
  a729a3f0
- Temporarily add push to badge and pages ci · b389baeb
  Gervaise Henry authored 4 years ago
  
  b389baeb
- Remove before script · 0e172155
  Gervaise Henry authored 4 years ago
  
  0e172155
- Fix ci · 36328ede
  Gervaise Henry authored 4 years ago
  
  36328ede
- Change env to only run if true · 6e74559f
  Gervaise Henry authored 4 years ago
  
  6e74559f
- Move env dnanexus ci to schedule and create badge · 5b7e99b6
  Gervaise Henry authored 4 years ago
  
  5b7e99b6
- Remove env before script · ca12a257
  Gervaise Henry authored 4 years ago
  
  ca12a257
- Fix ci · e55ed278
  Gervaise Henry authored 4 years ago
  
  e55ed278
- Fix test dx output location · 470b4a67
  Gervaise Henry authored 4 years ago
  
  470b4a67
- Fix dnanexus input file loacation · e79b28af
  Gervaise Henry authored 4 years ago
  
  e79b28af
- Move dx app name to front · db0e0337
  Gervaise Henry authored 4 years ago
  
  db0e0337
- Fix project context id · 7ca45331
  Gervaise Henry authored 4 years ago
  
  7ca45331
- Change workspace id to project context id · d4cc9843
  Gervaise Henry authored 4 years ago
  
  d4cc9843
- Add project flag for dx run · 51e76269
  Gervaise Henry authored 4 years ago
  
  51e76269
- Add workspace name to appname · f28563d5
  Gervaise Henry authored 4 years ago
  
  f28563d5
- Add custom dx env vars to dx run · eef7d414
  Gervaise Henry authored 4 years ago
  
  eef7d414
- Add dx run · 5216ba93
  Gervaise Henry authored 4 years ago
  
  5216ba93
- Add project to uplod dir · 9cbe8453
  Gervaise Henry authored 4 years ago
  
  9cbe8453
- Fix ci lint · 2af8ff12
  Gervaise Henry authored 4 years ago
  
  2af8ff12
- Add test fastq upload to dnanexus env ci · 3a4a7cec
  Gervaise Henry authored 4 years ago
  
  3a4a7cec

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