Ci

Add and improve CI

PR checklist

• This comment contains a description of changes (with reason)
• If you've fixed a bug or added code that should be tested, add tests!
• Documentation in docs is updated
• Replace dag.png with the most recent CI pipleine integrated_pe artifact
• CHANGELOG.md is updated
• README.md is updated
• LICENSE.md is updated with new contributors
• Docker images moved to production release and changed in pipeline
• Docker images used in the CI unit tests match those used in pipleine

• Close issue
  Closes #27 (closed) Closes #48 (closed) Closes #54 (closed)

/cc @ghenry @venkat.malladi

workflow/tests/test_dataQC.py

@@ -16,9 +16,8 @@ def test_dataQC():
 def countLines(fileName):
     data = False
     file = open(fileName, "r")
-    for line in file:
-        if file.readlines()[6] != "geneID":
-            data = True
-            break
+    file.readline()
+    if file.readlines()[6] != "geneID":
+        data = True
 
     return data