Commits · c3053816021dfe428519390aff3c4df78b54d745 · GUDMAP_RBK / RNA-seq

Dec 29, 2020
- Change python and bash scripts to new naming convention · c3053816
  Gervaise Henry authored 4 years ago
  
  c3053816
Dec 28, 2020
- Use updated input bag name · cafc56d2
  Gervaise Henry authored 4 years ago
  
  cafc56d2
- Use updated input bag name · bdb02167
  Gervaise Henry authored 4 years ago
  
  bdb02167
- Use updated input bag name · 91d52f90
  Gervaise Henry authored 4 years ago
  
  91d52f90
- Fix upload processed file process · a308569f
  Gervaise Henry authored 4 years ago
  
  a308569f
- Add delete entry sctrpt to upload processed file process · b073d7ba
  Gervaise Henry authored 4 years ago
  
  b073d7ba
- Fix exists in upload processed file process · eb4b1b5a
  Gervaise Henry authored 4 years ago
  
  eb4b1b5a
- Update naming convention in dataQC · 829a6187
  Gervaise Henry authored 4 years ago
  
  829a6187
- Send delete entry script to upload qc process · 4e976b0e
  Gervaise Henry authored 4 years ago
  
  4e976b0e
- Update filenames to new convention · 58b6ce0e
  Gervaise Henry authored 4 years ago
  
  58b6ce0e
Dec 27, 2020
- Fix upload execution run unique exist check · d35b3d62
  Gervaise Henry authored 4 years ago
  
  d35b3d62
Dec 17, 2020
- Change process output bag name to uploadProcessedFiles · b08a7fc5
  Gervaise Henry authored 4 years ago
  
  b08a7fc5
- Update replicate bdbag export config name · 17962772
  Gervaise Henry authored 4 years ago
  
  17962772
- Check for old processed files and delete catalog entry · e09c1872
  Gervaise Henry authored 4 years ago
  
  e09c1872
- Check for old mRNA QC and delete catalog entry · 3aa23f2a
  Gervaise Henry authored 4 years ago
  
  3aa23f2a
- Change Workflow name · 1e6c14ae
  Gervaise Henry authored 4 years ago
  
  1e6c14ae
- Change processed file ouputs to use _ as separator for custom txt · a6562099
  Gervaise Henry authored 4 years ago
  
  a6562099
- Add date to input/output bag · b0eb119b
  Gervaise Henry authored 4 years ago
  
  b0eb119b
- Change hatrac path upload for input/output bags · 1bdfd212
  Gervaise Henry authored 4 years ago
  
  1bdfd212
- Start changing model · 8792bf4b
  Gervaise Henry authored 4 years ago
  
  8792bf4b
Dec 14, 2020
- Debug process file deriva upload & no retry for integration · 04536845
  Gervaise Henry authored 4 years ago
  
  04536845
- Use optional upload for output bag creation · 0eab4834
  Gervaise Henry authored 4 years ago
  
  0eab4834
- Add optional upload param · 8ab63c95
  Gervaise Henry authored 4 years ago
  
  8ab63c95
- Add Output Bag · bdfd5567
  Gervaise Henry authored 4 years ago
  
  bdfd5567
Dec 07, 2020
- Add upload output bag · ab0e4bb6
  Gervaise Henry authored 4 years ago
  
  ab0e4bb6
Dec 05, 2020
- Add upload mRNA QC · e4b99530
  Gervaise Henry authored 4 years ago
  
  e4b99530
Dec 02, 2020
- Add upload execution run · 62790800
  Gervaise Henry authored 4 years ago
  
  62790800
Nov 30, 2020
- Add uploadInputBag · eb83dee4
  Gervaise Henry authored 4 years ago
  
  eb83dee4
Nov 20, 2020
- Add Jons Syntax Fix · a89eb9f5
  Jeremy Mathews authored 4 years ago
  
  a89eb9f5
Nov 19, 2020
- Change it all back · e605a9e7
  Jeremy Mathews authored 4 years ago
  
  e605a9e7
- Gervaise made me do it again · 89af5024
  Jeremy Mathews authored 4 years ago
  
  89af5024
- Gervaise made me do it · e1bded43
  Jeremy Mathews authored 4 years ago
  
  e1bded43
- Add run details to output bag · f4e55f71
  Jeremy Mathews authored 4 years ago
  
  f4e55f71
Nov 13, 2020
- Spell correction. · 7e63c86b
  Venkat Malladi authored 4 years ago
  
  7e63c86b
- Update use of includeInputs. · ccfd2d00
  Venkat Malladi authored 4 years ago
  
  ccfd2d00
- Update changes to reflect only the change in order of steps. Fix output files. · c0a39ab8
  Venkat Malladi authored 4 years ago
  
  c0a39ab8
- Remove pigz parllel option. · baf8ba31
  Venkat Malladi authored 4 years ago
  
  baf8ba31
- Update with set for since only 1 variable. Also update pattern to pass files. · 5c9e24e4
  Venkat Malladi authored 4 years ago
  
  5c9e24e4
Nov 12, 2020
- Add back parallel trim step. Moved fastqc step after trim. · 7cf5d610
  Venkat Malladi authored 4 years ago
  
  7cf5d610
Nov 09, 2020
- Add in software versions and references. · 10cd6a4c
  Venkat Malladi authored 4 years ago
  
  10cd6a4c