Commits · a6562099e16d6c37741123b3ea4f48158db71f87 · GUDMAP_RBK / RNA-seq

Dec 17, 2020
- Change processed file ouputs to use _ as separator for custom txt · a6562099
  Gervaise Henry authored 4 years ago
  
  a6562099
- Add date to input/output bag · b0eb119b
  Gervaise Henry authored 4 years ago
  
  b0eb119b
- Change hatrac path upload for input/output bags · 1bdfd212
  Gervaise Henry authored 4 years ago
  
  1bdfd212
- Start changing model · 8792bf4b
  Gervaise Henry authored 4 years ago
  
  8792bf4b
Dec 14, 2020
- Debug process file deriva upload & no retry for integration · 04536845
  Gervaise Henry authored 4 years ago
  
  04536845
- Use optional upload for output bag creation · 0eab4834
  Gervaise Henry authored 4 years ago
  
  0eab4834
- Add optional upload param · 8ab63c95
  Gervaise Henry authored 4 years ago
  
  8ab63c95
- Add Output Bag · bdfd5567
  Gervaise Henry authored 4 years ago
  
  bdfd5567
Dec 07, 2020
- Add upload output bag · ab0e4bb6
  Gervaise Henry authored 4 years ago
  
  ab0e4bb6
Dec 05, 2020
- Add upload mRNA QC · e4b99530
  Gervaise Henry authored 4 years ago
  
  e4b99530
Dec 02, 2020
- Add upload execution run · 62790800
  Gervaise Henry authored 4 years ago
  
  62790800
Nov 30, 2020
- Add uploadInputBag · eb83dee4
  Gervaise Henry authored 4 years ago
  
  eb83dee4
Nov 20, 2020
- Add Jons Syntax Fix · a89eb9f5
  Jeremy Mathews authored 4 years ago
  
  a89eb9f5
Nov 19, 2020
- Change it all back · e605a9e7
  Jeremy Mathews authored 4 years ago
  
  e605a9e7
- Gervaise made me do it again · 89af5024
  Jeremy Mathews authored 4 years ago
  
  89af5024
- Gervaise made me do it · e1bded43
  Jeremy Mathews authored 4 years ago
  
  e1bded43
- Add run details to output bag · f4e55f71
  Jeremy Mathews authored 4 years ago
  
  f4e55f71
Nov 13, 2020
- Spell correction. · 7e63c86b
  Venkat Malladi authored 4 years ago
  
  7e63c86b
- Update use of includeInputs. · ccfd2d00
  Venkat Malladi authored 4 years ago
  
  ccfd2d00
- Update changes to reflect only the change in order of steps. Fix output files. · c0a39ab8
  Venkat Malladi authored 4 years ago
  
  c0a39ab8
- Remove pigz parllel option. · baf8ba31
  Venkat Malladi authored 4 years ago
  
  baf8ba31
- Update with set for since only 1 variable. Also update pattern to pass files. · 5c9e24e4
  Venkat Malladi authored 4 years ago
  
  5c9e24e4
Nov 12, 2020
- Add back parallel trim step. Moved fastqc step after trim. · 7cf5d610
  Venkat Malladi authored 4 years ago
  
  7cf5d610
Nov 09, 2020
- Add in software versions and references. · 10cd6a4c
  Venkat Malladi authored 4 years ago
  
  10cd6a4c
Oct 31, 2020
- fix typo in name of pipeline. · cd7534b9
  Venkat Malladi authored 4 years ago
  
  cd7534b9
- Update config for email. · 7cf8c4d2
  Venkat Malladi authored 4 years ago
  
  7cf8c4d2
- Test failure. · b8e8774b
  Venkat Malladi authored 4 years ago
  
  b8e8774b
Sep 20, 2020
- Reduce species inference cutoffs · c114a629
  Gervaise Henry authored 4 years ago
  
  0.0.4_indev
  
  c114a629
Sep 14, 2020
- Fix elif · deabc9e6
  Gervaise Henry authored 4 years ago
  
  deabc9e6
- Fix datahub specific bed folder move · cb073c1e
  Gervaise Henry authored 4 years ago
  
  cb073c1e
- Fix ref move after getRef datahub pull · 296ee453
  Gervaise Henry authored 4 years ago
  
  296ee453
- Add refName to getRef · 719bd9f5
  Gervaise Henry authored 4 years ago
  
  719bd9f5
Sep 13, 2020
- Fix pulled ref mv · b25ebe4e
  Gervaise Henry authored 4 years ago
  
  b25ebe4e
- Move bed only on non ERCC · af4b5d04
  Gervaise Henry authored 4 years ago
  
  af4b5d04
- Add search for ERCC ref · 778044bc
  Gervaise Henry authored 4 years ago
  
  778044bc
- Combine inputs for getRefInfer · b123b09a
  Gervaise Henry authored 4 years ago
  
  b123b09a
- Remove collect for getRefInfer · fe197fce
  Gervaise Henry authored 4 years ago
  
  fe197fce
- Use channel · 7a0560f5
  Gervaise Henry authored 4 years ago
  
  7a0560f5
- Add extractRefData.py as channel · 42048773
  Gervaise Henry authored 4 years ago
  
  42048773
- Revert each · 8795d7f5
  Gervaise Henry authored 4 years ago
  
  8795d7f5