Commits · 9d8a103227d91008802ba9abc13c2f1486e5763d · GUDMAP_RBK / RNA-seq

Jan 19, 2020
- Add quotes around endsMeta test · 9d8a1032
  Gervaise Henry authored 5 years ago
  
  9d8a1032
- Remove set ends in trimData · b1330359
  Gervaise Henry authored 5 years ago
  
  b1330359
- Fix replication of ends · 7b6f7324
  Gervaise Henry authored 5 years ago
  
  7b6f7324
- Fix endsManual log · c876602e
  Gervaise Henry authored 5 years ago
  
  c876602e
- Ignore FutureWarnings · 714c61bc
  Gervaise Henry authored 5 years ago
  
  714c61bc
- Ignore FutureWarnings · 9081851f
  Gervaise Henry authored 5 years ago
  
  9081851f
- Fix endsManual · e7eaeaa4
  Gervaise Henry authored 5 years ago
  
  e7eaeaa4
- Fix fastq # test · 70ce7af1
  Gervaise Henry authored 5 years ago
  
  70ce7af1
- Fix len fastqs · fbd2da78
  Gervaise Henry authored 5 years ago
  
  fbd2da78
- Fix undetected meta endness · 29f36785
  Gervaise Henry authored 5 years ago
  
  29f36785
- Keep meta endness separate · bce4b6ea
  Gervaise Henry authored 5 years ago
  
  bce4b6ea
- Add to unit test for endManual · 0f709935
  Gervaise Henry authored 5 years ago
  
  0f709935
- Add manual detection of endness if not stored · 0acf38a4
  Gervaise Henry authored 5 years ago
  
  0acf38a4
Jan 18, 2020
- Remove ends output from trimData · c2b81c7c
  Gervaise Henry authored 5 years ago
  
  c2b81c7c
- Fix script as input for parseMetadata · 96626502
  Gervaise Henry authored 5 years ago
  
  96626502
- Fix script as input for parseMetadata · fd0b7c01
  Gervaise Henry authored 5 years ago
  
  fd0b7c01
- Merge develop into branch · 41a2c611
  Gervaise Henry authored 5 years ago
  
  41a2c611
- Add unit test for parseMetadata · 8c5b5a80
  Gervaise Henry authored 5 years ago
  
  8c5b5a80
- Add unit test for parseMetadata · 07007f49
  Gervaise Henry authored 5 years ago
  
  07007f49
- Parse metadata · e32cb502
  Gervaise Henry authored 5 years ago
  
  e32cb502
- Add checks for meta repRID · 710a67d9
  Gervaise Henry authored 5 years ago
  
  710a67d9
- Merge branch '20-make.scripts.inputs' into 'develop' · d499ea11
  Gervaise Henry authored 5 years ago
```
Resolve "Make scripts input files for processes"

Closes #20

See merge request !12
```
  d499ea11
- Give trim_galore all cpu's available · 81cb8e68
  Gervaise Henry authored 5 years ago
  
  81cb8e68
- Make .nf scripts more readable · 131b5517
  Gervaise Henry authored 5 years ago
  
  131b5517
- Fix second trimData unit test · 4d88c335
  Gervaise Henry authored 5 years ago
  
  4d88c335
- Split unit test for trimData to 2 · 44a7326b
  Gervaise Henry authored 5 years ago
  
  44a7326b
- Make bdbag scripts an input · 43935dd7
  Gervaise Henry authored 5 years ago
  
  43935dd7
- Remove executor settings in .nf · 0ecf1945
  Gervaise Henry authored 5 years ago
  
  0ecf1945
- Remove sub-folders from logsDir · f0d25e3c
  Gervaise Henry authored 5 years ago
  
  f0d25e3c
- Set publishData mode to copy · c56354c1
  Gervaise Henry authored 5 years ago
  
  c56354c1
- Remove repRID from inputs and make global · 850b8d68
  Gervaise Henry authored 5 years ago
  
  850b8d68
- Initial code · 2be5d85a
  Gervaise Henry authored 5 years ago
  
  2be5d85a
Jan 17, 2020
- Merge branch 'develop' into '2-process_createManifest' · 47fc8ba7
  Gervaise Henry authored 5 years ago
```
Develop

See merge request !11
```
  47fc8ba7
Jan 15, 2020
- Combine trimData CI se/pe into 1 unit test · 947e7543
  Gervaise Henry authored 5 years ago
  
  947e7543
- Merge branch '19-ci.integration.test' into 'develop' · 4cdee6d3
  Gervaise Henry authored 5 years ago
```
Resolve "Add integration CI test"

Closes #19

See merge request !10
```
  4cdee6d3
- Add https_proxy in getBag process · 4227759d
  Gervaise Henry authored 5 years ago
  
  4227759d
- Try removing proxy settings for biohpc nf config · 33f96a38
  Gervaise Henry authored 5 years ago
  
  33f96a38
- Add singularity and proxy settings to biohpc nf config · 279a541b
  Gervaise Henry authored 5 years ago
  
  279a541b
- Module load nextflow · 103fb9db
  Gervaise Henry authored 5 years ago
  
  103fb9db
- Add initial integration CI test · 07605c0d
  Gervaise Henry authored 5 years ago
  
  07605c0d