Commits · 821a0f05ca8eb6eb427250a19ed8193b099744c8 · GUDMAP_RBK / RNA-seq

Feb 12, 2021
- Move fastq count before cp · 821a0f05
  Gervaise Henry authored 4 years ago
  
  821a0f05
- Change bdbag to use cookie locally · 785c4858
  Gervaise Henry authored 4 years ago
  
  785c4858
Jan 19, 2021
- Allow .R[1,2] and _R[1,2] fastqs · 56d35250
  Gervaise Henry authored 4 years ago
  
  56d35250
- Only used fastq's named correctly · d78689ad
  Gervaise Henry authored 4 years ago
  
  d78689ad
Jan 07, 2021
- Change error conditional in bdbag fetch to use file · edc05a65
  Gervaise Henry authored 4 years ago
  
  edc05a65
- Change error conditional in bdbag fetch to use file · c4be8ffc
  Gervaise Henry authored 4 years ago
  
  c4be8ffc
- Fix bool in bdbag fetch script · 0f810d4d
  Gervaise Henry authored 4 years ago
  
  0f810d4d
- Fix bool in bdbag fetch script · 9ac7a870
  Gervaise Henry authored 4 years ago
  
  9ac7a870
- Fix bdbag fetch script bool · e7d0d7ec
  Gervaise Henry authored 4 years ago
  
  e7d0d7ec
- Fix bool in bdbag fetch script · 551f4c20
  Gervaise Henry authored 4 years ago
  
  551f4c20
- Fix bool in bdbag fetch script · a235c7b6
  Gervaise Henry authored 4 years ago
  
  a235c7b6
Jan 06, 2021
- Make new inputBag for testing with txt fetch instead of fastq · a2cbcce1
  Gervaise Henry authored 4 years ago
  
  a2cbcce1
- Remove validate structure from test get data · bc08762a
  Gervaise Henry authored 4 years ago
  
  bc08762a
- Move new bdbag fetch code from test · d9d4d35a
  Gervaise Henry authored 4 years ago
  
  d9d4d35a
- Fix bdbag fetch script · e4cd20ad
  Gervaise Henry authored 4 years ago
  
  e4cd20ad
- Fix species error variable · 6269b5af
  Gervaise Henry authored 4 years ago
  
  6269b5af
- add --debug to bdbag fetch · e7c1ae2a
  Gervaise Henry authored 4 years ago
  
  e7c1ae2a
Dec 29, 2020
- Change python and bash scripts to new naming convention · c3053816
  Gervaise Henry authored 4 years ago
  
  c3053816
Dec 28, 2020
- Use updated input bag name · 91d52f90
  Gervaise Henry authored 4 years ago
  
  91d52f90
Dec 17, 2020
- Fix bag fetch name for test · a7af3936
  Gervaise Henry authored 4 years ago
  
  a7af3936
- Start changing model · 8792bf4b
  Gervaise Henry authored 4 years ago
  
  8792bf4b
May 20, 2020
- Fix cp error for fastq names with multiple R1/2 · 0c3d1a1e
  Gervaise Henry authored 4 years ago
  
  0c3d1a1e
May 06, 2020
- Fix fastq output name fix · 178ac5c0
  Gervaise Henry authored 4 years ago
  
  178ac5c0
- Fix fastq output name · 77800005
  Gervaise Henry authored 4 years ago
  
  77800005
- Generalize destination filename for fastq qxtraction · a3839184
  Gervaise Henry authored 4 years ago
  
  a3839184
- Generalize find fastq after fetch · c02d977a
  Gervaise Henry authored 4 years ago
  
  c02d977a
May 04, 2020
- Change fetched fastq's mv to cv... mv was truncating some files · 0c0407f9
  Gervaise Henry authored 4 years ago
  
  0c0407f9
Feb 14, 2020
- Fix if not exist in bdbagFetch.sh · 66591ecd
  Gervaise Henry authored 5 years ago
  
  66591ecd
- Fix if not exist in bdbagFetch.sh · cf08008a
  Gervaise Henry authored 5 years ago
  
  cf08008a
- Fix if not exist in bdbagFetch.sh · 42a16c69
  Gervaise Henry authored 5 years ago
  
  42a16c69
- CI unit: getRef cp local, getData test version of script to fetch txt · 61cc48e6
  Gervaise Henry authored 5 years ago
  
  61cc48e6
Jan 14, 2020
- Rename fetched fastqs and fix se/pe · bbcfbd9f
  Gervaise Henry authored 5 years ago
  
  bbcfbd9f
Jan 13, 2020
- Add getData deriva-download of bagit · e552d2e6
  Gervaise Henry authored 5 years ago
  
  e552d2e6
Oct 30, 2019
- Updated for concise output files · c2b05eaa
  Jonathan Gesell authored 5 years ago
  
  c2b05eaa
Oct 11, 2019
- Working version of getData process · ed35a88e
  Gervaise Henry authored 5 years ago
  
  ed35a88e