Commits · 543f68f68fd22e1b25d978fe05a07b6d87c75012 · GUDMAP_RBK / RNA-seq

Dec 30, 2020
- Fix singularity for badges · 543f68f6
  Gervaise Henry authored 4 years ago
  
  543f68f6
- Move badge building to script · c7fa682b
  Gervaise Henry authored 4 years ago
  
  c7fa682b
- Use docker container for git commands for badge · 43f4d4bd
  Gervaise Henry authored 4 years ago
  
  43f4d4bd
- Add echos for badge variables · fed127df
  Gervaise Henry authored 4 years ago
  
  fed127df
- Add whole badges folder to artifact output · 79a52960
  Gervaise Henry authored 4 years ago
  
  79a52960
- Change badges to flat · 3723eb9a
  Gervaise Henry authored 4 years ago
  
  3723eb9a
- Make single deploy stage · bbdbcb2d
  Gervaise Henry authored 4 years ago
  
  bbdbcb2d
- Fix pipeline badges · 72f86ddc
  Gervaise Henry authored 4 years ago
  
  72f86ddc
- Fix pipeline badges · b94afa74
  Gervaise Henry authored 4 years ago
  
  b94afa74
- Create badges for branches · 16d1698e
  Gervaise Henry authored 4 years ago
  
  16d1698e
- Set latest tag filter · 966f8a7a
  Gervaise Henry authored 4 years ago
  
  966f8a7a
- Set dependecnies for pages · b714492c
  Gervaise Henry authored 4 years ago
  
  b714492c
- Give pages script · 600640c0
  Gervaise Henry authored 4 years ago
  
  600640c0
- Deploy badges to pages · da55dfe9
  Gervaise Henry authored 4 years ago
  
  da55dfe9
- Change to pulling badges · 95a508c5
  Gervaise Henry authored 4 years ago
  
  95a508c5
Dec 29, 2020
- Add chmod to badge before script · 68a7c89c
  Gervaise Henry authored 4 years ago
  
  68a7c89c
- Do badge ci allways · c6fddba1
  Gervaise Henry authored 4 years ago
  
  c6fddba1
- Create badge json · f662d525
  Gervaise Henry authored 4 years ago
  
  f662d525
Nov 20, 2020
- Merge branch '68-outputBagDetails' into 'develop' · dcda53fd
  Gervaise Henry authored 4 years ago
```
Add run details to output bag

Closes #68

See merge request !51
```
  dcda53fd
- Add Jons Syntax Fix · a89eb9f5
  Jeremy Mathews authored 4 years ago
  
  a89eb9f5
Nov 19, 2020
- Change it all back · e605a9e7
  Jeremy Mathews authored 4 years ago
  
  e605a9e7
- Fix RID in singularity · 9b9245dc
  Jeremy Mathews authored 4 years ago
  
  9b9245dc
- Fixed RID · 331ce5b8
  Jeremy Mathews authored 4 years ago
  
  331ce5b8
- Gervaise made me do it again · 89af5024
  Jeremy Mathews authored 4 years ago
  
  89af5024
- Gervaise made me do it · e1bded43
  Jeremy Mathews authored 4 years ago
  
  e1bded43
- Add run details to output bag · f4e55f71
  Jeremy Mathews authored 4 years ago
  
  f4e55f71
- Merge branch '65-trim_galore' into 'develop' · 83d47884
  Gervaise Henry authored 4 years ago
```
Add back parallel trim step. Moved fastqc step after trim.

Closes #65

See merge request !50
```
  83d47884
Nov 14, 2020
- update dag. · 6728b926
  Venkat Malladi authored 4 years ago
  
  6728b926
Nov 13, 2020
- Spell correction. · 7e63c86b
  Venkat Malladi authored 4 years ago
  
  7e63c86b
- Update use of includeInputs. · ccfd2d00
  Venkat Malladi authored 4 years ago
  
  ccfd2d00
- Update changes to reflect only the change in order of steps. Fix output files. · c0a39ab8
  Venkat Malladi authored 4 years ago
  
  c0a39ab8
- Fix extra space. · ecf2f89e
  Venkat Malladi authored 4 years ago
  
  ecf2f89e
- Remove pigz parllel option. · baf8ba31
  Venkat Malladi authored 4 years ago
  
  baf8ba31
- Update with set for since only 1 variable. Also update pattern to pass files. · 5c9e24e4
  Venkat Malladi authored 4 years ago
  
  5c9e24e4
Nov 12, 2020
- Add back parallel trim step. Moved fastqc step after trim. · 7cf5d610
  Venkat Malladi authored 4 years ago
  
  7cf5d610
Nov 11, 2020
- Update bicf_logo.png · 3ccdc626
  Gervaise Henry authored 4 years ago
  
  3ccdc626
- Merge branch '78-tool_version' into develop · 0a0b51e4
  Gervaise Henry authored 4 years ago
  
  0a0b51e4
- Merge branch '60-consistency_tests' into 'develop' · f232c58b
  Gervaise Henry authored 4 years ago
```
Update consistency checks to be fully in python.

Closes #60

See merge request !46
```
  f232c58b
- Fix id in generate versions. · df286d4f
  Venkat Malladi authored 4 years ago
  
  df286d4f
- Fix number of reads that map. · 7950f38f
  Venkat Malladi authored 4 years ago
  
  7950f38f