Skip to content
Snippets Groups Projects
Commit 9b9245dc authored by Jeremy Mathews's avatar Jeremy Mathews
Browse files

Fix RID in singularity

parent 331ce5b8
Branches
Tags
2 merge requests!58Develop,!51Add run details to output bag
Pipeline #8389 canceled with stages
in 2 minutes and 34 seconds
......@@ -44,7 +44,7 @@ getData:
- singularity run 'docker://bicf/gudmaprbkfilexfer:2.0.1_indev' bdbag --version > version_bdbag.txt
- ln -sfn `readlink -e ./test_data/auth/cookies.txt` ~/.bdbag/deriva-cookies.txt
- unzip ./test_data/bag/staging/Replicate_Q-Y5JA.zip
- singularity run 'docker://bicf/gudmaprbkfilexfer:2.0.1_indev' bash ./workflow/scripts/bdbagFetch.sh Replicate_Q-Y5F6 Replicate_Q-Y5F6 TEST
- singularity run 'docker://bicf/gudmaprbkfilexfer:2.0.1_indev' bash ./workflow/scripts/bdbagFetch.sh Replicate_Q-Y5JA Replicate_Q-Y5JA TEST
- pytest -m getData
artifacts:
name: "$CI_JOB_NAME"
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment