Commits · 42b5b070eb02a28352ee990880b28deb6ebfb155 · GUDMAP_RBK / RNA-seq · GitLab

Snippets Groups Projects

Aug 03, 2020
- Output read length as str · 42b5b070
  Gervaise Henry authored 4 years ago
  
  42b5b070
- Extract read length from submitter metadata · e8b92b99
  Gervaise Henry authored 4 years ago
  
  e8b92b99
Jul 31, 2020
- Fix consistency module #27 · 4539dba1
  Gervaise Henry authored 4 years ago
  
  4539dba1
- Move expected assigned into ci.yml #27 · b247d7e4
  Gervaise Henry authored 4 years ago
  
  b247d7e4
- Add consistency tests #27 · 3f55fde3
  Gervaise Henry authored 4 years ago
  
  3f55fde3
Jul 30, 2020
- Test for pytest for parseMetadata: remove unnecessary print #54 · d7b38e88
  Gervaise Henry authored 4 years ago
  
  d7b38e88
- Test for pytest for parseMetadata: supposed to pass #54 · 6fe96e00
  Gervaise Henry authored 4 years ago
  
  6fe96e00
- Test for pytest for parseMetadata: supposed to pass #54 · 22fbaf52
  Gervaise Henry authored 4 years ago
  
  22fbaf52
- Test for pytest for parseMetadata: force pass #54 · 729ee825
  Gervaise Henry authored 4 years ago
  
  729ee825
- Test for pytest for parseMetadata: force pass #54 · 50df04d1
  Gervaise Henry authored 4 years ago
  
  50df04d1
- Test for pytest for parseMetadata: supposed to pass #54 · 32f281b4
  Gervaise Henry authored 4 years ago
  
  32f281b4
- Test for pytest for parseMetadata: supposed to pass #54 · 7179e4ed
  Gervaise Henry authored 4 years ago
  
  7179e4ed
- Edit dataQC pytest: should pass #48 · 979e6af4
  Gervaise Henry authored 4 years ago
  
  979e6af4
- Test for pytest for parseMetadata: supposed to pass #54 · 042e9177
  Gervaise Henry authored 4 years ago
  
  042e9177
- Print output of parseMetadata pytest read · fe544976
  Gervaise Henry authored 4 years ago
  
  fe544976
- Print output of parseMetadata pytest read · 95aa209b
  Gervaise Henry authored 4 years ago
  
  95aa209b
- Test for pytest for parseMetadata: supposed to pass #54 · 58415f1c
  Gervaise Henry authored 4 years ago
  
  58415f1c
- Test for pytest for parseMetadata: supposed to pass #54 · dbb02aae
  Gervaise Henry authored 4 years ago
  
  dbb02aae
- Test for pytest for parseMetadata: supposed to pass #54 · 390a9b5d
  Gervaise Henry authored 4 years ago
  
  390a9b5d
- Add pytest for parseMetadata: expect fail #54 · 5c4e2529
  Gervaise Henry authored 4 years ago
  
  5c4e2529
- Add initial trial for dataQC unit improvement #48 · 6ed76f56
  Gervaise Henry authored 4 years ago
  
  6ed76f56
- Add back trackStart process · d691c1cf
  Gervaise Henry authored 4 years ago
  
  d691c1cf
Jul 23, 2020
- AWS Batch works · 9fe16dfb
  Gervaise Henry authored 4 years ago
  
  9fe16dfb
Jul 15, 2020
- Move createTestData to test_data · 460d9e53
  Gervaise Henry authored 4 years ago
  
  460d9e53
Jul 14, 2020
- Reformat runtime info · 3ab2e9b3
  Gervaise Henry authored 4 years ago
  
  3ab2e9b3
- Add pipeline version var to track · 113f2b7c
  Gervaise Henry authored 4 years ago
  
  113f2b7c
- Fix param reference in runtime info · 7f7e0e9d
  Gervaise Henry authored 4 years ago
  
  7f7e0e9d
- Add runtime info · 92edc38f
  Gervaise Henry authored 4 years ago
  
  92edc38f
- Add unsorted deduped bam to test_data creation · 7afd0f5e
  Gervaise Henry authored 4 years ago
  
  7afd0f5e
- Fix new CI unit tests · 3da0fb06
  Gervaise Henry authored 4 years ago
  
  3da0fb06
- Add script to create test data · 5f257a20
  Gervaise Henry authored 4 years ago
  
  5f257a20
- Update CI unit tests to use repRID Q-Y5F6 · 3301ebb4
  Gervaise Henry authored 4 years ago
  
  3301ebb4
May 20, 2020
- Fix cp error for fastq names with multiple R1/2 · 0c3d1a1e
  Gervaise Henry authored 4 years ago
  
  0c3d1a1e
May 13, 2020
- Stage experiment settings as ExperimentSettings.csv to prevent bash error · ea8a2c38
  Gervaise Henry authored 4 years ago
  
  ea8a2c38
May 11, 2020
- Add source param for getBag #50 · a36c189e
  Gervaise Henry authored 4 years ago
  
  a36c189e
May 06, 2020
- Fix fastq output name fix · 178ac5c0
  Gervaise Henry authored 4 years ago
  
  178ac5c0
- Fix fastq output name · 77800005
  Gervaise Henry authored 4 years ago
  
  77800005
- Generalize destination filename for fastq qxtraction · a3839184
  Gervaise Henry authored 4 years ago
  
  a3839184
- Generalize find fastq after fetch · c02d977a
  Gervaise Henry authored 4 years ago
  
  c02d977a
May 05, 2020
- Change to staging.gudmap.org · ebab7cd7
  Gervaise Henry authored 4 years ago
  
  ebab7cd7