Commits · 1cf16a8ff154a4aa623bdcd81a99349668a28f0a · GUDMAP_RBK / RNA-seq · GitLab

Snippets Groups Projects

Jan 04, 2021
- Add double excape to new line in fail · 1cf16a8f
  Gervaise Henry authored 4 years ago
  
  1cf16a8f
- Fix fail lint · 49be4123
  Gervaise Henry authored 4 years ago
  
  49be4123
- Fix fail if lint · 3ad21a40
  Gervaise Henry authored 4 years ago
  
  3ad21a40
- Update the pipeline error format · 3bfab006
  Gervaise Henry authored 4 years ago
  
  3bfab006
- Fix fail execution run condition · 1867a815
  Gervaise Henry authored 4 years ago
  
  1867a815
- Fix fail execution run condition · 756ad35e
  Gervaise Henry authored 4 years ago
  
  756ad35e
- Make separate process for failing execution run · 6c9ef597
  Gervaise Henry authored 4 years ago
  
  6c9ef597
- Fix bash int if comparison for fastq number check · 992f9c60
  Gervaise Henry authored 4 years ago
  
  992f9c60
- Try and fix error finalize execution run · dc3c7ff4
  Gervaise Henry authored 4 years ago
  
  dc3c7ff4
- Try and fix error finalize execution run · 20fc2bf0
  Gervaise Henry authored 4 years ago
  
  20fc2bf0
- Try and fix error finalize execution run · e5325a56
  Gervaise Henry authored 4 years ago
  
  e5325a56
- Add check for number of fastqs · 7148b6f2
  Gervaise Henry authored 4 years ago
  
  7148b6f2
- Fix tin by chromosome · 0c347440
  Gervaise Henry authored 4 years ago
  
  0c347440
Jan 03, 2021
- Update changelog · e7d917ee
  Gervaise Henry authored 4 years ago
  
  e7d917ee
- Add finalize execution run and add new references using bag · 57834f48
  Gervaise Henry authored 4 years ago
  
  57834f48
Dec 30, 2020
- Update default running values · d1192a5e
  Gervaise Henry authored 4 years ago
  
  d1192a5e
Dec 29, 2020
- Use the right script for upload QC · f5c550ab
  Gervaise Henry authored 4 years ago
  
  f5c550ab
- Change python and bash scripts to new naming convention · c3053816
  Gervaise Henry authored 4 years ago
  
  c3053816
Dec 28, 2020
- Use updated input bag name · cafc56d2
  Gervaise Henry authored 4 years ago
  
  cafc56d2
- Use updated input bag name · bdb02167
  Gervaise Henry authored 4 years ago
  
  bdb02167
- Use updated input bag name · 91d52f90
  Gervaise Henry authored 4 years ago
  
  91d52f90
- Fix upload processed file process · a308569f
  Gervaise Henry authored 4 years ago
  
  a308569f
- Add delete entry sctrpt to upload processed file process · b073d7ba
  Gervaise Henry authored 4 years ago
  
  b073d7ba
- Fix exists in upload processed file process · eb4b1b5a
  Gervaise Henry authored 4 years ago
  
  eb4b1b5a
- Update naming convention in dataQC · 829a6187
  Gervaise Henry authored 4 years ago
  
  829a6187
- Send delete entry script to upload qc process · 4e976b0e
  Gervaise Henry authored 4 years ago
  
  4e976b0e
- Update filenames to new convention · 58b6ce0e
  Gervaise Henry authored 4 years ago
  
  58b6ce0e
Dec 27, 2020
- Fix upload execution run unique exist check · d35b3d62
  Gervaise Henry authored 4 years ago
  
  d35b3d62
Dec 17, 2020
- Change process output bag name to uploadProcessedFiles · b08a7fc5
  Gervaise Henry authored 4 years ago
  
  b08a7fc5
- Update replicate bdbag export config name · 17962772
  Gervaise Henry authored 4 years ago
  
  17962772
- Check for old processed files and delete catalog entry · e09c1872
  Gervaise Henry authored 4 years ago
  
  e09c1872
- Check for old mRNA QC and delete catalog entry · 3aa23f2a
  Gervaise Henry authored 4 years ago
  
  3aa23f2a
- Change Workflow name · 1e6c14ae
  Gervaise Henry authored 4 years ago
  
  1e6c14ae
- Change processed file ouputs to use _ as separator for custom txt · a6562099
  Gervaise Henry authored 4 years ago
  
  a6562099
- Add date to input/output bag · b0eb119b
  Gervaise Henry authored 4 years ago
  
  b0eb119b
- Change hatrac path upload for input/output bags · 1bdfd212
  Gervaise Henry authored 4 years ago
  
  1bdfd212
- Start changing model · 8792bf4b
  Gervaise Henry authored 4 years ago
  
  8792bf4b
Dec 14, 2020
- Debug process file deriva upload & no retry for integration · 04536845
  Gervaise Henry authored 4 years ago
  
  04536845
- Use optional upload for output bag creation · 0eab4834
  Gervaise Henry authored 4 years ago
  
  0eab4834
- Add optional upload param · 8ab63c95
  Gervaise Henry authored 4 years ago
  
  8ab63c95