Skip to content
Snippets Groups Projects
Commit 49be4123 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
Browse files

Fix fail lint

parent 3ad21a40
Branches
Tags
2 merge requests!58Develop,!56Resolve "Detect error in inferMetadata for tracking"
Pipeline #8793 passed with stages
in 3 minutes and 51 seconds
......@@ -2019,7 +2019,7 @@ process failExecutionRun {
pipelineError_details=\$(echo \${pipelineError_details}"Species: submitted value = \"${speciesMeta}\" while inferred value = \"${speciesInfer}\". ")
#pipelineError_details=\$(echo \${pipelineError_details}"|*Species*|${speciesMeta}|"${speciesInfer}|\n ")
fi
pipelineError_details=\$(echo "\${pipelineError_details::-1}"
pipelineError_details=\$(echo "\${pipelineError_details::-1}")
rid=\$(python3 ${script_uploadExecutionRun_failExecutionRun} -r ${repRID} -w \${workflow} -g \${genome} -i ${inputBagRID} -s Error -d "\${pipelineError_details}" -o ${source} -c \${cookie} -u ${executionRunRID})
echo LOG: execution run RID marked as error - \${rid} >> ${repRID}.finalizeExecutionRun.log
fi
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment