Commits · 041cfa5c669f1dfceafa5ee7d50478a6f17d8ef6 · GUDMAP_RBK / RNA-seq · GitLab

Snippets Groups Projects

Jan 15, 2021
- Update biohpc.config · 73490420
  Venkat Malladi authored 4 years ago
  
  73490420
- Update aws.config · bce79412
  Venkat Malladi authored 4 years ago
  
  bce79412
- Fix process name in config file · a36cfc7b
  Venkat Malladi authored 4 years ago
  
  a36cfc7b
Jan 14, 2021
- Fix script name · effe7d20
  Gervaise Henry authored 4 years ago
  
  effe7d20
- Update manifest version · 165fc906
  Gervaise Henry authored 4 years ago
  
  165fc906
- Fix mistype error · f839e74f
  Gervaise Henry authored 4 years ago
  
  f839e74f
- Change replicate count for badges to count all replicates that match major version number · b104fc98
  Gervaise Henry authored 4 years ago
  
  b104fc98
- Output execution run rid to tracking for fail and failPre Execution · 413e1ce6
  Gervaise Henry authored 4 years ago
  
  413e1ce6
- Split failPreExecution into 2 processes · 982092fb
  Gervaise Henry authored 4 years ago
  
  982092fb
Jan 12, 2021
- Fix complete/fail date tracking passing · 71592755
  Gervaise Henry authored 4 years ago
  
  71592755
Jan 11, 2021
- Fix json uploads to tracking · 312a6047
  Gervaise Henry authored 4 years ago
  
  312a6047
- Fix date ouput for finalize execution run table · 0b6fa2aa
  Gervaise Henry authored 4 years ago
  
  0b6fa2aa
- Fix execution run rid upload to tracking table · 8b71fe3c
  Gervaise Henry authored 4 years ago
  
  8b71fe3c
- Pass whole json file to curl for lamda into AWS qc table · f8c2c290
  Gervaise Henry authored 4 years ago
  
  f8c2c290
- Add newlines to trackStart · f1f92c5b
  Gervaise Henry authored 4 years ago
  
  f1f92c5b
- Add execution run rid to tracking table · 99d29c0d
  Gervaise Henry authored 4 years ago
  
  99d29c0d
- Revert fail execution run · a93462f9
  Gervaise Henry authored 4 years ago
  
  a93462f9
- Update QC report table · 18900014
  Gervaise Henry authored 4 years ago
  
  18900014
- Add status table updates with error and successful · beb4e59b
  Gervaise Henry authored 4 years ago
  
  beb4e59b
- Add GUDMAP/RBK tracking to trackStart · eb9e0354
  Gervaise Henry authored 4 years ago
  
  eb9e0354
- Change consistency check to 5% · 8c7d30a6
  Gervaise Henry authored 4 years ago
  
  8c7d30a6
Jan 10, 2021
- Change to assertTrue for experssion. · 0d9eca4a
  Venkat Malladi authored 4 years ago
  
  0d9eca4a
Jan 09, 2021
- Change tool version checker for badges to use latest tag · 0611f9e3
  Gervaise Henry authored 4 years ago
  
  0611f9e3
- Add median TIN to mRNA_QC table · ac1c64c4
  Gervaise Henry authored 4 years ago
  
  ac1c64c4
- Update deriva container to 1.4:1.0.0 · 64fc509b
  Gervaise Henry authored 4 years ago
  
  64fc509b
- Change consistency test to be +/- 1% · b8434976
  Gervaise Henry authored 4 years ago
  
  b8434976
Jan 08, 2021
- Get ready for 1.0.0 version. · 41565810
  Venkat Malladi authored 4 years ago
  
  41565810
- Remove split study from repository. Moved to indepednent repository. Close #87 . · c018e25c
  Venkat Malladi authored 4 years ago
  
  c018e25c
- Fix prod server rep count · 578ff495
  Gervaise Henry authored 4 years ago
  
  578ff495
- Fix time param · 57423462
  Gervaise Henry authored 4 years ago
  
  57423462
- Add 4hr time limit for all processes (biohpc.config) · a57f7e87
  Gervaise Henry authored 4 years ago
  
  a57f7e87
- Add 1 retry to all processes · e2773496
  Gervaise Henry authored 4 years ago
  
  e2773496
Jan 07, 2021
- Remove reports from config and add to split study · 884ffb3f
  Gervaise Henry authored 4 years ago
  
  884ffb3f
- Fix config · 988b3b11
  Gervaise Henry authored 4 years ago
  
  988b3b11
- Add report, trace, timeline · efac9095
  Gervaise Henry authored 4 years ago
  
  efac9095
- Reduce split bag concurrent reps to 5 again · 95fc6b1f
  Gervaise Henry authored 4 years ago
  
  95fc6b1f
- Fix fastq force · 10101561
  Gervaise Henry authored 4 years ago
  
  10101561
- Update split study · 09eb019e
  Gervaise Henry authored 4 years ago
  
  09eb019e
- Add retries to all data-hub processes for biohpc config · 2d9e2523
  Gervaise Henry authored 4 years ago
  
  2d9e2523
- Fix infer with species error · 860af5bd
  Gervaise Henry authored 4 years ago
  
  860af5bd