Merge branch 'new.qc.out' into 'develop' (fe51a743) · Commits · GUDMAP_RBK / RNA-seq · GitLab

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RNA-seq
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fe51a743

Commit fe51a743 authored 4 years ago by

Venkat Malladi

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Merge branch 'new.qc.out' into 'develop'

Metadata output update

Closes #56 and #52

See merge request !36

parents 0b6630da 6341ca53

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2 merge requests!37v0.0.1,!36Metadata output update

Pipeline #7838 passed with stages

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.gitignore 2 additions, 0 deletions

.gitignore
.gitlab-ci.yml 6 additions, 2 deletions

.gitlab-ci.yml
README.md 8 additions, 2 deletions

README.md
cleanup.sh 2 additions, 0 deletions

cleanup.sh
docs/dag.png 0 additions, 0 deletions

docs/dag.png
workflow/conf/multiqc_config.yaml 6 additions, 1 deletion

workflow/conf/multiqc_config.yaml
workflow/rna-seq.nf 84 additions, 17 deletions

workflow/rna-seq.nf
workflow/scripts/convertGeneSymbols.R 24 additions, 0 deletions

workflow/scripts/convertGeneSymbols.R
workflow/scripts/parseMeta.py 5 additions, 0 deletions

workflow/scripts/parseMeta.py
workflow/scripts/splitStudy.py 24 additions, 0 deletions

workflow/scripts/splitStudy.py
workflow/scripts/splitStudy.sh 17 additions, 0 deletions

workflow/scripts/splitStudy.sh
workflow/scripts/tinHist.py 5 additions, 1 deletion

workflow/scripts/tinHist.py
workflow/tests/test_consistency.py 1 addition, 1 deletion

workflow/tests/test_consistency.py
workflow/tests/test_parseMetadata.py 1 addition, 1 deletion

workflow/tests/test_parseMetadata.py

with 185 additions and 25 deletions

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