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Commit fcab3193 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix downsample ci

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.gitlab-ci.yml
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...@@ -194,7 +194,7 @@ downsampleData: ...@@ -194,7 +194,7 @@ downsampleData:
- merge_requests - merge_requests
- schedules - schedules
script: script:
- singularity run 'docker://gudmaprbk/seqtk1.3:1.0.0' seqtk 2>&1 | greo -o Version.* > version_seqtk.txt - singularity run 'docker://gudmaprbk/seqtk1.3:1.0.0' seqtk 2>&1 | grep -o Version.* > version_seqtk.txt
- singularity run 'docker://gudmaprbk/seqtk1.3:1.0.0' seqtk sample -s100 ./test_data/fastq/small/Q-Y5F6_1M.se_trimmed.fq.gz 1000 1> sampled.1.fq - singularity run 'docker://gudmaprbk/seqtk1.3:1.0.0' seqtk sample -s100 ./test_data/fastq/small/Q-Y5F6_1M.se_trimmed.fq.gz 1000 1> sampled.1.fq
- pytest -m downsampleData - pytest -m downsampleData
artifacts: artifacts:
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