diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 391e51257444d5b10f28a67c2da77d3213f4b4a6..0d4c427e2bbe425713010827aad468262e9b203f 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -194,7 +194,7 @@ downsampleData: - merge_requests - schedules script: - - singularity run 'docker://gudmaprbk/seqtk1.3:1.0.0' seqtk 2>&1 | greo -o Version.* > version_seqtk.txt + - singularity run 'docker://gudmaprbk/seqtk1.3:1.0.0' seqtk 2>&1 | grep -o Version.* > version_seqtk.txt - singularity run 'docker://gudmaprbk/seqtk1.3:1.0.0' seqtk sample -s100 ./test_data/fastq/small/Q-Y5F6_1M.se_trimmed.fq.gz 1000 1> sampled.1.fq - pytest -m downsampleData artifacts: