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Commit f453a4e3 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix no fastq's present in inputBag

parent 6cdde011
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2 merge requests!65Develop,!64Resolve "samtools sort: couldn't allocate memory for bam_mem"
......@@ -267,6 +267,10 @@ process getData {
echo -e "LOG: fetched" >> ${repRID}.getData.log
fastqCount=\$(ls *.fastq.gz | wc -l)
if [ "\${fastqCount}" == "0" ]
then
touch dummy.R1.fastq.gz
fi
echo "\${fastqCount}" > fastqCount.csv
"""
}
......
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