Add 1 retry to all processes

workflow/conf/biohpc.config

@@ -6,27 +6,23 @@ process {
   executor = 'slurm'
   queue = 'super'
   clusterOptions = '--hold'
+  errorStrategy = 'retry'
+  maxRetries = 1
 
   withName:trackStart {
     executor = 'local'
   }
   withName:getBag {
     executor = 'local'
-    errorStrategy = 'retry'
-    maxRetries = 1
   }
   withName:getData {
     queue = 'super'
-    errorStrategy = 'retry'
-    maxRetries = 1
   }
   withName:parseMetadata {
     executor = 'local'
   }
   withName:trimData {
     queue = 'super'
-    errorStrategy = 'retry'
-    maxRetries = 1
   }
   withName:getRefInfer {
     queue = 'super'
@@ -69,44 +65,30 @@ process {
   }
   withName:uploadInputBag {
     executor = 'local'
-    errorStrategy = 'retry'
-    maxRetries = 1
   }
   withName:uploadExecutionRun {
     executor = 'local'
-    errorStrategy = 'retry'
-    maxRetries = 1
   }
   withName:uploadQC {
     executor = 'local'
   }
   withName:uploadProcessedFile {
     executor = 'local'
-    errorStrategy = 'retry'
-    maxRetries = 1
   }
   withName:uploadOutputBag {
     executor = 'local'
   }
   withName:finalizeExecutionRun {
     executor = 'local'
-    errorStrategy = 'retry'
-    maxRetries = 1
   }
   withName:failPreExecutionRun {
     executor = 'local'
-    errorStrategy = 'retry'
-    maxRetries = 1
   }
   withName:failPreExecutionRun {
     executor = 'local'
-    errorStrategy = 'retry'
-    maxRetries = 1
   }
   withName:failExecutionRun {
     executor = 'local'
-    errorStrategy = 'retry'
-    maxRetries = 1
   }
 }