diff --git a/workflow/conf/biohpc.config b/workflow/conf/biohpc.config index e2d47d27d388d0ac079ca8d63a8ccd48ebd06c2a..d2323f3644161a3f64a8e356268ef803abbd1819 100755 --- a/workflow/conf/biohpc.config +++ b/workflow/conf/biohpc.config @@ -6,27 +6,23 @@ process { executor = 'slurm' queue = 'super' clusterOptions = '--hold' + errorStrategy = 'retry' + maxRetries = 1 withName:trackStart { executor = 'local' } withName:getBag { executor = 'local' - errorStrategy = 'retry' - maxRetries = 1 } withName:getData { queue = 'super' - errorStrategy = 'retry' - maxRetries = 1 } withName:parseMetadata { executor = 'local' } withName:trimData { queue = 'super' - errorStrategy = 'retry' - maxRetries = 1 } withName:getRefInfer { queue = 'super' @@ -69,44 +65,30 @@ process { } withName:uploadInputBag { executor = 'local' - errorStrategy = 'retry' - maxRetries = 1 } withName:uploadExecutionRun { executor = 'local' - errorStrategy = 'retry' - maxRetries = 1 } withName:uploadQC { executor = 'local' } withName:uploadProcessedFile { executor = 'local' - errorStrategy = 'retry' - maxRetries = 1 } withName:uploadOutputBag { executor = 'local' } withName:finalizeExecutionRun { executor = 'local' - errorStrategy = 'retry' - maxRetries = 1 } withName:failPreExecutionRun { executor = 'local' - errorStrategy = 'retry' - maxRetries = 1 } withName:failPreExecutionRun { executor = 'local' - errorStrategy = 'retry' - maxRetries = 1 } withName:failExecutionRun { executor = 'local' - errorStrategy = 'retry' - maxRetries = 1 } }