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Commit de7d66a6 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fixt assignedReads handling

parent a9b7c868
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2 merge requests!37v0.0.1,!36Metadata output update
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workflow/rna-seq.nf
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...@@ -842,7 +842,7 @@ process countData { ...@@ -842,7 +842,7 @@ process countData {
output: output:
path ("*.countTable.csv") into counts path ("*.countTable.csv") into counts
path ("*.countData.summary") into countsQC path ("*.countData.summary") into countsQC
path ("assignedReads") into inferMetadata_assignedReads path ("assignedReads.csv") into inferMetadata_assignedReads
script: script:
""" """
...@@ -888,7 +888,7 @@ process countData { ...@@ -888,7 +888,7 @@ process countData {
// Extract number of assigned reads metadata into channel // Extract number of assigned reads metadata into channel
assignedReadsInfer = Channel.create() assignedReadsInfer = Channel.create()
inferMetadata_assignedReads.splitCsv(sep: ",", header: false).separate( inferMetadata_assignedReads.splitCsv(sep: ",", header: false).separate(
assignedReads assignedReadsInfer
) )
/* /*
......
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