From de7d66a60b55a2bd5e5d68ba63eaff58a0e94fa7 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Tue, 4 Aug 2020 09:52:15 -0500
Subject: [PATCH] Fixt assignedReads handling
---
workflow/rna-seq.nf | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 9c936c6..9579ce1 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -842,7 +842,7 @@ process countData {
output:
path ("*.countTable.csv") into counts
path ("*.countData.summary") into countsQC
- path ("assignedReads") into inferMetadata_assignedReads
+ path ("assignedReads.csv") into inferMetadata_assignedReads
script:
"""
@@ -888,7 +888,7 @@ process countData {
// Extract number of assigned reads metadata into channel
assignedReadsInfer = Channel.create()
inferMetadata_assignedReads.splitCsv(sep: ",", header: false).separate(
- assignedReads
+ assignedReadsInfer
)
/*
--
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