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Commit cdd32cb3 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix convert gene symbol script to use new countTable name

parent cf1d1688
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2 merge requests!58Develop,!53Resolve "process_derivaUpload"
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workflow/scripts/convertGeneSymbols.R
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...@@ -7,7 +7,7 @@ option_list=list( ...@@ -7,7 +7,7 @@ option_list=list(
opt=parse_args(OptionParser(option_list=option_list)) opt=parse_args(OptionParser(option_list=option_list))
rm(option_list) rm(option_list)
countTable <- read.csv(paste0(opt$repRID,".countTable.csv"), stringsAsFactors=FALSE) countTable <- read.csv(paste0(opt$repRID,"_countTable.csv"), stringsAsFactors=FALSE)
geneID <- read.delim("geneID.tsv", header=FALSE, stringsAsFactors=FALSE) geneID <- read.delim("geneID.tsv", header=FALSE, stringsAsFactors=FALSE)
Entrez <- read.delim("Entrez.tsv", header=FALSE, stringsAsFactors=FALSE) Entrez <- read.delim("Entrez.tsv", header=FALSE, stringsAsFactors=FALSE)
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