diff --git a/workflow/scripts/convertGeneSymbols.R b/workflow/scripts/convertGeneSymbols.R index 49752f1bba5a4dd8d91ed8609c6f2f82b8fafacc..05a1528e73525f96b87a9127bb3b4884693299f9 100644 --- a/workflow/scripts/convertGeneSymbols.R +++ b/workflow/scripts/convertGeneSymbols.R @@ -7,7 +7,7 @@ option_list=list( opt=parse_args(OptionParser(option_list=option_list)) rm(option_list) -countTable <- read.csv(paste0(opt$repRID,".countTable.csv"), stringsAsFactors=FALSE) +countTable <- read.csv(paste0(opt$repRID,"_countTable.csv"), stringsAsFactors=FALSE) geneID <- read.delim("geneID.tsv", header=FALSE, stringsAsFactors=FALSE) Entrez <- read.delim("Entrez.tsv", header=FALSE, stringsAsFactors=FALSE)