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Commit ca12a257 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Remove env before script

parent e55ed278
2 merge requests!76Develop,!75Env.ci
Pipeline #9484 passed with stages
in 43 minutes and 29 seconds
...@@ -1020,15 +1020,13 @@ dnanexus: ...@@ -1020,15 +1020,13 @@ dnanexus:
except: except:
variables: variables:
- $dnanexusEnv == "false" - $dnanexusEnv == "false"
before_script:
- module load dxtoolkit/python27/0.294.0
- dx upload ./test_data/auth/c* --path /ci-env/auth/ --parents --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace}
- dx upload ./test_data/fastq/small/Q-Y5F6_1M.R{1,2}.fastq.gz --path /ci-env/input/ --parents --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace}
script: script:
- hostname - hostname
- ulimit -a - ulimit -a
- module load dxtoolkit/python27/0.294.0 - module load dxtoolkit/python27/0.294.0
- export NXF_XPACK_LICENSE=${nxf_license} - export NXF_XPACK_LICENSE=${nxf_license}
- dx upload ./test_data/auth/c* --path /ci-env/auth/ --parents --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace}
- dx upload ./test_data/fastq/small/Q-Y5F6_1M.R{1,2}.fastq.gz --path /ci-env/input/ --parents --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace}
- > - >
dx run nf-dxapp-bicf --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace} \ dx run nf-dxapp-bicf --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace} \
--watch \ --watch \
......
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