diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 1860d211614679285b0b7d010af04ef8816c6582..4ebecc75eb0d4ab3d2fad495b246528edcd6e8de 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -1020,15 +1020,13 @@ dnanexus: except: variables: - $dnanexusEnv == "false" - before_script: - - module load dxtoolkit/python27/0.294.0 - - dx upload ./test_data/auth/c* --path /ci-env/auth/ --parents --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace} - - dx upload ./test_data/fastq/small/Q-Y5F6_1M.R{1,2}.fastq.gz --path /ci-env/input/ --parents --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace} script: - hostname - ulimit -a - module load dxtoolkit/python27/0.294.0 - export NXF_XPACK_LICENSE=${nxf_license} + - dx upload ./test_data/auth/c* --path /ci-env/auth/ --parents --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace} + - dx upload ./test_data/fastq/small/Q-Y5F6_1M.R{1,2}.fastq.gz --path /ci-env/input/ --parents --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace} - > dx run nf-dxapp-bicf --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace} \ --watch \