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Commit c99833c4 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Merge branch 'develop' into '10-process.aggregateQC' 

Develop

See merge request !31
parents 0993c872 b855a1fe
3 merge requests!37v0.0.1,!33Resolve "process_qc",!31Develop
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workflow/rna-seq.nf
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...@@ -48,6 +48,7 @@ script_inferMeta = Channel.fromPath("${baseDir}/scripts/inferMeta.sh") ...@@ -48,6 +48,7 @@ script_inferMeta = Channel.fromPath("${baseDir}/scripts/inferMeta.sh")
* trackStart: track start of pipeline * trackStart: track start of pipeline
*/ */
params.ci = false params.ci = false
params.dev = false
process trackStart { process trackStart {
script: script:
""" """
...@@ -59,10 +60,12 @@ process trackStart { ...@@ -59,10 +60,12 @@ process trackStart {
"sessionId": "${workflow.sessionId}", \ "sessionId": "${workflow.sessionId}", \
"pipeline": "gudmap.rbk_rnaseq", \ "pipeline": "gudmap.rbk_rnaseq", \
"start": "${workflow.start}", \ "start": "${workflow.start}", \
"repRID": ${reRID} \
"astrocyte": false, \ "astrocyte": false, \
"status": "started", \ "status": "started", \
"nextflowVersion": "${workflow.nextflow.version}", "nextflowVersion": "${workflow.nextflow.version}", \
"ci": ${params.ci}}' \ "ci": ${params.ci}, \
"dev": ${params.dev}}' \
"https://xku43pcwnf.execute-api.us-east-1.amazonaws.com/ProdDeploy/pipeline-tracking" "https://xku43pcwnf.execute-api.us-east-1.amazonaws.com/ProdDeploy/pipeline-tracking"
""" """
} }
......
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