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Commit c6fe0ba0 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Test CI unit uploadInputBag

parent cf071e88
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2 merge requests!58Develop,!53Resolve "process_derivaUpload"
Pipeline #8427 passed with stages
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......@@ -288,7 +288,7 @@ uploadInputBag:
script:
- ln -sfn `readlink -e ./test_data/auth/credential.json` ./credential.json
- >
hatrac=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host dev.gudmap.org ls /hatrac/resources/rnaseq/pipeline/input_bag/ | grep -o /TESTX$) &&
hatrac=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host dev.gudmap.org ls /hatrac/resources/rnaseq/pipeline/input_bag/ | grep -o /TESTX$)
echo ${hatrac} &&
if [ -z "${hatrac}" ]; then singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host dev.gudmap.org mkdir /hatrac/resources/rnaseq/pipeline/input_bag/TESTX; fi
- echo THIS IS A TEST FILE > test.txt
......
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