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Commit b292ccee authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Update rna-seq.nf

parent 862e319e
3 merge requests!37v0.0.1,!27Develop,!26Resolve "Chunk bam for parallel tin calculation"
Pipeline #6435 failed with stages
in 3 minutes and 41 seconds
...@@ -487,6 +487,6 @@ process inferMetadata { ...@@ -487,6 +487,6 @@ process inferMetadata {
done | parallel -j `nproc` -k > ${repRID}.sorted.deduped.tin.xls 2>>${repRID}.rseqc.err done | parallel -j `nproc` -k > ${repRID}.sorted.deduped.tin.xls 2>>${repRID}.rseqc.err
# write infered metadata to file # write infered metadata to file
echo -e \${endness},\${stranded},\${strategy},\${percentF},\${percentR},\${fail} > infer.csv echo \${endness},\${stranded},\${strategy},\${percentF},\${percentR},\${fail} > infer.csv
""" """
} }
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