Merge branch '29-fetch.refs.from.s3' into 'develop' (b1770e35) · Commits · GUDMAP_RBK / RNA-seq · GitLab

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GUDMAP_RBK
RNA-seq
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b1770e35

Commit b1770e35 authored 5 years ago by

Venkat Malladi

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Merge branch '29-fetch.refs.from.s3' into 'develop'

Resolve "process_getRef"

Closes #29

See merge request !16

parents be3dd19b 0bf42fdf

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2 merge requests!37v0.0.1,!16Resolve "process_getRef"

Pipeline #5860 passed with stages

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.gitignore 1 addition, 1 deletion

.gitignore
.gitlab-ci.yml 20 additions, 14 deletions

.gitlab-ci.yml
CHANGELOG.md 0 additions, 2 deletions

CHANGELOG.md
workflow/conf/aws_ondemand.config 6 additions, 0 deletions

workflow/conf/aws_ondemand.config
workflow/conf/aws_spot.config 6 additions, 0 deletions

workflow/conf/aws_spot.config
workflow/conf/biohpc.config 4 additions, 1 deletion

workflow/conf/biohpc.config
workflow/nextflow.config 4 additions, 1 deletion

workflow/nextflow.config
workflow/rna-seq.nf 107 additions, 70 deletions

workflow/rna-seq.nf
workflow/scripts/modifyFetch.py 0 additions, 25 deletions

workflow/scripts/modifyFetch.py
workflow/scripts/parseMeta.py 3 additions, 2 deletions

workflow/scripts/parseMeta.py
workflow/scripts/splitFetch.py 0 additions, 25 deletions

workflow/scripts/splitFetch.py
workflow/tests/test_alignReads.py 14 additions, 20 deletions

workflow/tests/test_alignReads.py
workflow/tests/test_trimData.py 4 additions, 3 deletions

workflow/tests/test_trimData.py

with 169 additions and 164 deletions

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