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Commit aaac13e4 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Change spike from infer to meta for uploadExecutionRun

parent a35b8fe2
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1 merge request!87Develop
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rna-seq.nf
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...@@ -521,6 +521,7 @@ strandedMeta.into { ...@@ -521,6 +521,7 @@ strandedMeta.into {
spikeMeta.into { spikeMeta.into {
spikeMeta_checkMetadata spikeMeta_checkMetadata
spikeMeta_aggrQC spikeMeta_aggrQC
spikeMeta_uploadExecutionRun
spikeMeta_failPreExecutionRun spikeMeta_failPreExecutionRun
spikeMeta_failExecutionRun spikeMeta_failExecutionRun
} }
...@@ -1297,7 +1298,6 @@ spikeInfer.into { ...@@ -1297,7 +1298,6 @@ spikeInfer.into {
spikeInfer_getRef spikeInfer_getRef
spikeInfer_checkMetadata spikeInfer_checkMetadata
spikeInfer_aggrQC spikeInfer_aggrQC
spikeInfer_uploadExecutionRun
spikeInfer_failExecutionRun spikeInfer_failExecutionRun
} }
...@@ -2269,7 +2269,7 @@ process uploadExecutionRun { ...@@ -2269,7 +2269,7 @@ process uploadExecutionRun {
input: input:
path script_uploadExecutionRun_uploadExecutionRun path script_uploadExecutionRun_uploadExecutionRun
path credential, stageAs: "credential.json" from deriva_uploadExecutionRun path credential, stageAs: "credential.json" from deriva_uploadExecutionRun
val spike from spikeInfer_uploadExecutionRun val spike from spikeMeta_uploadExecutionRun
val species from speciesInfer_uploadExecutionRun val species from speciesInfer_uploadExecutionRun
val inputBagRID from inputBagRID_uploadExecutionRun val inputBagRID from inputBagRID_uploadExecutionRun
val fastqCountError from fastqCountError_uploadExecutionRun val fastqCountError from fastqCountError_uploadExecutionRun
......
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