From aaac13e41e155ecb24ffc5d9e1408ec203146c8d Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Thu, 6 May 2021 20:36:42 -0500
Subject: [PATCH] Change spike from infer to meta for uploadExecutionRun

---
 rna-seq.nf | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/rna-seq.nf b/rna-seq.nf
index 9f6c9af..b25ec0d 100644
--- a/rna-seq.nf
+++ b/rna-seq.nf
@@ -521,6 +521,7 @@ strandedMeta.into {
 spikeMeta.into {
   spikeMeta_checkMetadata
   spikeMeta_aggrQC
+  spikeMeta_uploadExecutionRun
   spikeMeta_failPreExecutionRun
   spikeMeta_failExecutionRun
 }
@@ -1297,7 +1298,6 @@ spikeInfer.into {
   spikeInfer_getRef
   spikeInfer_checkMetadata
   spikeInfer_aggrQC
-  spikeInfer_uploadExecutionRun
   spikeInfer_failExecutionRun
 }
 
@@ -2269,7 +2269,7 @@ process uploadExecutionRun {
   input:
     path script_uploadExecutionRun_uploadExecutionRun
     path credential, stageAs: "credential.json" from deriva_uploadExecutionRun
-    val spike from spikeInfer_uploadExecutionRun
+    val spike from spikeMeta_uploadExecutionRun
     val species from speciesInfer_uploadExecutionRun
     val inputBagRID from inputBagRID_uploadExecutionRun
     val fastqCountError from fastqCountError_uploadExecutionRun
-- 
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