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Commit a3d8f200 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Remove unnecessary excape

parent e7024f45
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2 merge requests!68Develop,!67Resolve "Change Single Read to Single End for submitted endness"
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...@@ -370,7 +370,7 @@ process parseMetadata { ...@@ -370,7 +370,7 @@ process parseMetadata {
# get strandedness metadata # get strandedness metadata
stranded=\$(python3 ${script_parseMeta} -r ${repRID} -m "${experimentSettings}" -p stranded) stranded=\$(python3 ${script_parseMeta} -r ${repRID} -m "${experimentSettings}" -p stranded)
echo -e "LOG: strandedness metadata parsed: \${stranded}" >> ${repRID}.parseMetadata.log echo -e "LOG: strandedness metadata parsed: \${stranded}" >> ${repRID}.parseMetadata.log
if [ "\${strandedForce}" != "" ] if [ "${strandedForce}" != "" ]
then then
stranded=${strandedForce} stranded=${strandedForce}
echo -e "LOG: spike-in metadata forced: \${spike}" >> ${repRID}.parseMetadata.log echo -e "LOG: spike-in metadata forced: \${spike}" >> ${repRID}.parseMetadata.log
...@@ -379,7 +379,7 @@ process parseMetadata { ...@@ -379,7 +379,7 @@ process parseMetadata {
# get spike-in metadata # get spike-in metadata
spike=\$(python3 ${script_parseMeta} -r ${repRID} -m "${experimentSettings}" -p spike) spike=\$(python3 ${script_parseMeta} -r ${repRID} -m "${experimentSettings}" -p spike)
echo -e "LOG: spike-in metadata parsed: \${spike}" >> ${repRID}.parseMetadata.log echo -e "LOG: spike-in metadata parsed: \${spike}" >> ${repRID}.parseMetadata.log
if [ "\${spikeForce}" != "" ] if [ "${spikeForce}" != "" ]
then then
spike=${spikeForce} spike=${spikeForce}
echo -e "LOG: spike-in metadata forced: \${spike}" >> ${repRID}.parseMetadata.log echo -e "LOG: spike-in metadata forced: \${spike}" >> ${repRID}.parseMetadata.log
......
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