From a3d8f20042e6bf4e0273b2a15a5cf3d7ec7bb984 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Tue, 26 Jan 2021 16:16:30 -0600
Subject: [PATCH] Remove unnecessary excape
---
workflow/rna-seq.nf | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 28ebeef..42a1619 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -370,7 +370,7 @@ process parseMetadata {
# get strandedness metadata
stranded=\$(python3 ${script_parseMeta} -r ${repRID} -m "${experimentSettings}" -p stranded)
echo -e "LOG: strandedness metadata parsed: \${stranded}" >> ${repRID}.parseMetadata.log
- if [ "\${strandedForce}" != "" ]
+ if [ "${strandedForce}" != "" ]
then
stranded=${strandedForce}
echo -e "LOG: spike-in metadata forced: \${spike}" >> ${repRID}.parseMetadata.log
@@ -379,7 +379,7 @@ process parseMetadata {
# get spike-in metadata
spike=\$(python3 ${script_parseMeta} -r ${repRID} -m "${experimentSettings}" -p spike)
echo -e "LOG: spike-in metadata parsed: \${spike}" >> ${repRID}.parseMetadata.log
- if [ "\${spikeForce}" != "" ]
+ if [ "${spikeForce}" != "" ]
then
spike=${spikeForce}
echo -e "LOG: spike-in metadata forced: \${spike}" >> ${repRID}.parseMetadata.log
--
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