Merge branch '5-dedupReads' into 'develop' (a30baa9c) · Commits · GUDMAP_RBK / RNA-seq · GitLab

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GUDMAP_RBK
RNA-seq
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a30baa9c

Commit a30baa9c authored 5 years ago by

Gervaise Henry

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Merge branch '5-dedupReads' into 'develop'

Resolve "process_dedup"

Closes #5

See merge request !17

parents b1770e35 8d75705f

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2 merge requests!37v0.0.1,!17Resolve "process_dedup"

Pipeline #5878 passed with stages

in 51 minutes and 51 seconds

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.gitlab-ci.yml 6 additions, 0 deletions

.gitlab-ci.yml
workflow/conf/aws_ondemand.config 10 additions, 1 deletion

workflow/conf/aws_ondemand.config
workflow/conf/aws_spot.config 10 additions, 1 deletion

workflow/conf/aws_spot.config
workflow/conf/biohpc.config 5 additions, 2 deletions

workflow/conf/biohpc.config
workflow/nextflow.config 4 additions, 1 deletion

workflow/nextflow.config
workflow/rna-seq.nf 38 additions, 6 deletions

workflow/rna-seq.nf
workflow/tests/test_alignReads.py 1 addition, 17 deletions

workflow/tests/test_alignReads.py
workflow/tests/test_dedupReads.py 14 additions, 0 deletions

workflow/tests/test_dedupReads.py

with 88 additions and 28 deletions

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