Merge resolution (8d75705f) · Commits · GUDMAP_RBK / RNA-seq · GitLab

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GUDMAP_RBK
RNA-seq
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8d75705f

Commit 8d75705f authored 5 years ago by

Gervaise Henry

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parents d16e6c86 b1770e35

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2 merge requests!37v0.0.1,!17Resolve "process_dedup"

Pipeline #5871 passed with stages

in 1 hour, 36 minutes, and 8 seconds

Changes 14
Pipelines 1

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.gitignore 1 addition, 1 deletion

.gitignore
.gitlab-ci.yml 21 additions, 16 deletions

.gitlab-ci.yml
CHANGELOG.md 0 additions, 2 deletions

CHANGELOG.md
workflow/conf/aws_ondemand.config 16 additions, 1 deletion

workflow/conf/aws_ondemand.config
workflow/conf/aws_spot.config 16 additions, 1 deletion

workflow/conf/aws_spot.config
workflow/conf/biohpc.config 8 additions, 5 deletions

workflow/conf/biohpc.config
workflow/nextflow.config 6 additions, 3 deletions

workflow/nextflow.config
workflow/rna-seq.nf 114 additions, 73 deletions

workflow/rna-seq.nf
workflow/scripts/modifyFetch.py 0 additions, 25 deletions

workflow/scripts/modifyFetch.py
workflow/scripts/parseMeta.py 3 additions, 2 deletions

workflow/scripts/parseMeta.py
workflow/scripts/splitFetch.py 0 additions, 25 deletions

workflow/scripts/splitFetch.py
workflow/tests/test_alignReads.py 6 additions, 28 deletions

workflow/tests/test_alignReads.py
workflow/tests/test_dedupReads.py 2 additions, 21 deletions

workflow/tests/test_dedupReads.py
workflow/tests/test_trimData.py 4 additions, 3 deletions

workflow/tests/test_trimData.py

with 197 additions and 206 deletions

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